DR403618

Overview
NameDR403618
Unique NameDR403618
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403618 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.596e-48
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 2
Query:  152 MARSLFKAKLLLAPVADGISLSVSRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 442
            MARSLFKAKLLLAPVADGISLS+SRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DR403618 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.566e-22
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = 2
Query:  152 MARSLFKAKLLLAPVADGISLSVSRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 439
            MARS+   KLL A + DG+ +S+SRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DR403618 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  152 MARSLFKAKLLLAPVADGISLSVSRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 439
            MARS+   K L A V D + +S+SRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
BLAST of DR403618 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 42/97 (43.30%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  152 MARSLFKAKLLLAPVADGISLSVSRRGYAAAAPLG-TISRTGIMEKNDLRPAVREDS---GASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 430
            MARS    K+L A VADG S + +R G+AAAA    + +R G     ++ P   E+    G   +W PDP+TGYYRPEN   EID A++R  +L  K
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVLGKK 96          
The following BLAST results are available for this feature:
BLAST of DR403618 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEA5_CITSI1.596e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI2.566e-2254.81Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.839e-2051.92Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
ARG2_PHAAU5.928e-1143.30Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241K24 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241K24 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403618 ID=DR403618; Name=DR403618; organism=Citrus sinensis; type=EST; length=670bp
GGGGACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGC
TACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAAC
ATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAAC
AATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTG
ATGGCATCTCGCTCTCCGTTAGCAGGAGAGGATATGCTGCAGCAGCACCC
TTGGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCC
TGCGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCA
TCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCA
GAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGT
GGTGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTT
AAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTG
TTGTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCATG
ATTTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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