CX053707

Overview
NameCX053707
Unique NameCX053707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053707 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.692e-19
Identity = 52/114 (45.61%), Postives = 67/114 (58.77%), Query Frame = 3
Query:    3 DNSTCPEGSKQASPKDLNYPSMAAQVSAGKPFTIKFPRTVTNVGLPNSTYKAKILQNEKLSIKVVPEVLSFRSLNEKKSFNVIVTGMLTGQLLSAALVWSDGNHNARSPIIVHS 344
            D S C  G+      DLNYPS    VS  + F   F RT+T+V    STY+A I   + L+I V P VLSF  L ++KSF + V G + G ++SA+LVWSDG H  RSPI + S
Sbjct:  617 DYSACTSGNT-GRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVSASLVWSDGVHYVRSPITITS 729          
BLAST of CX053707 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.387e-14
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 3
Query:   51 LNYPSMAAQVSAGKPFTIK-FPRTVTNVGLPNSTYKAKILQNEKLSIKVVPEVLSFRSLNEKKSFNVIVTG--MLTGQLLSAALVWSDGNHNARSPIIVHS 344
            LNYP++   + + K  T+  F R VTNVG P+S Y A +   + + I V P+ LSF   ++K+SF V+V    M  G+++S  LVW    H+ RSPI+++S
Sbjct:  645 LNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIYS 745          
BLAST of CX053707 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 3
Query:    6 NSTCPEGSKQASPKDLNYPSMAAQVSAGKPFTIKFPRTVTNVGLPNSTYKAKIL-QNEKLSIKVVPEVLSFRSLNEKKSFNVIVT---GMLTGQLLSAALVWSDGNHNARSPIIV 338
            N TC + SK  S  DLNYPS A  V     +  K+ RTVT+VG    TY  K+  +   + I V P VL+F+  NEKKS+ V  T      +G     ++ WSDG H   SP+ +
Sbjct:  644 NYTC-DPSKSYSVADLNYPSFAVNVDGVGAY--KYTRTVTSVG-GAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754          
The following BLAST results are available for this feature:
BLAST of CX053707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CUCM1_CUCME9.692e-1945.61Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH9.387e-1439.60Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
SUBL_ARATH5.695e-1139.13Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_7F11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7F11-L22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053707 ID=CX053707; Name=CX053707; organism=Citrus sinensis; type=EST; length=420bp
GAGATAACAGCACTTGTCCTGAAGGCTCAAAGCAAGCATCCCCAAAAGAT
CTCAATTACCCTTCAATGGCAGCTCAAGTTTCAGCTGGGAAGCCTTTCAC
AATCAAATTTCCAAGGACAGTTACAAACGTTGGCCTTCCAAACTCCACTT
ACAAGGCAAAAATCTTGCAAAATGAAAAATTGAGTATCAAAGTTGTACCT
GAAGTTCTCTCTTTTAGGTCCTTGAATGAGAAGAAGTCTTTTAATGTCAT
TGTTACAGGAATGCTAACGGGACAACTTCTCTCTGCTGCCTTGGTGTGGT
CTGATGGCAATCATAACGCTAGAAGCCCAATTATTGTACATTCACAGGGG
GCACAGGGCTAAAATATATAACGCGATATGTATAATTGGAAATGGAATAA
ATTGAACTTCAATTGCTTGC
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