CX053675

Overview
NameCX053675
Unique NameCX053675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053675 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.893e-20
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = -2
Query:  169 LSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 315
            LSSRP LC+RACGTCCARC CVPPGTSG+ E CPCYA++TTH  +RKCP
Sbjct:   56 LSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of CX053675 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.635e-18
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = -2
Query:  169 LSSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 315
            LS RP LCHRACGTCC RC CVPPGT G+ + C CYA++TTH GRRKCP
Sbjct:   50 LSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CX053675 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.999e-16
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = -2
Query:  169 SSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 312
            SSR  LC RAC +CC+RC CVPPGTSG+  +CPCYA++TTH GR KCP
Sbjct:   52 SSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CX053675 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.410e-16
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = -2
Query:  169 SSRPNLCHRACGTCCARCKCVPPGTSGHLEVCPCYATMTTHHGRRKCP 312
            SSRPNLC RAC +CC RC CVPPGT+G+  +CPCYA++TT  GR KCP
Sbjct:   52 SSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
The following BLAST results are available for this feature:
BLAST of CX053675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SNAK2_SOLTU3.893e-2077.55Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA1_ARATH1.635e-1873.47Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
GASA2_ARATH1.999e-1668.75Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH3.410e-1668.75Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_7E02_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7E02-J4-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053675 ID=CX053675; Name=CX053675; organism=Citrus sinensis; type=EST; length=319bp
TTTTTTTTAACGAACAAACATTAATTTAATTAATTTGCACACAGCAATGA
GCAATTAACATCGCTTTATTTAATTTGATGATATATAAATAGATGTATCA
CTAGCCAGTAGCCACAAGCAGCGACGGACAGGTGCATGTATCATGTATCA
TGCACAATCATTGTTTTAAGGGCACTTGCGTCTGCCATGGTGAGTGGTCA
TGGTGGCGTAGCAAGGGCAGACTTCAAGATGGCCTGAAGTGCCCGGAGGA
ACACACTTGCAACGGGCACAGCAGGTTCCACATGCCCTGTGACACAAGTT
TGGCCTCGACGATAACCCT
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