CX053670

Overview
NameCX053670
Unique NameCX053670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.416e-61
Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 1
Query:  418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            D I IREVW+ NL EEFALIREIVDK++YIAMDTEFPGVVL+PV  FK  ND NY+TLK+NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFN+ +DI+AS+S+ELL QCGIDFKKN EKGIDV RFGEL+M
Sbjct:    8 DSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMM 146          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 4.412e-55
Identity = 102/140 (72.86%), Postives = 118/140 (84.29%), Query Frame = 1
Query:  418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            D IQIREVWNDNLE E ALIRE+VD + ++AMDTEFPG+V RPVG FK   +Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF+L  DI+A+DS+ELL Q GIDF KNNE GID  RF ELLM
Sbjct:    8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLM 147          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.878e-54
Identity = 99/139 (71.22%), Postives = 116/139 (83.45%), Query Frame = 1
Query:  418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            D IQIREVWNDNL+EE  LIR++VD + Y+AMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF+L  DIFA DS+ELL Q GID  KN   GID  RF ELLM
Sbjct:    8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLM 146          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.795e-48
Identity = 94/145 (64.83%), Postives = 111/145 (76.55%), Query Frame = 1
Query:  418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIN------DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            D I+IREVWN NLE+E ALI + +D + Y+AMDTEFPG+V + V A  N N      +YNY TLK NV+MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+I D+FA DS+ELL +  ID +KNNE G+D  RF ELLM
Sbjct:   12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLM 156          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:  427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:  427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:  427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37
Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1
Query:  427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.577e-36
Identity = 74/135 (54.81%), Postives = 100/135 (74.07%), Query Frame = 1
Query:  430 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            IR+VW+ NL++E  LI  ++++Y  ++MDTEFPGVV RP+G FK+ +DY+YQTL+ NVD LK+IQ+GL  SDE GN P     + C WQFNF  FNL DD++A +S+ELL + GIDFKK+ E GI+   F ELL+
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLI 151          
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.689e-36
Identity = 79/136 (58.09%), Postives = 98/136 (72.06%), Query Frame = 1
Query:  427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834
            +I EVW  NLEEE   IR++  K+NYIAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM
Sbjct:   11 RICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLM 141          
The following BLAST results are available for this feature:
BLAST of CX053670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CAF1J_ARATH1.416e-6180.58Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1G_ARATH4.412e-5572.86Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH4.878e-5471.22Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1B_ARATH1.795e-4864.83Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CNOT7_MOUSE9.242e-3757.35CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]
CNOT7_HUMAN9.242e-3757.35CCR4-NOT transcription complex subunit 7 OS=Homo s... [more]
CNOT7_CHICK9.242e-3757.35CCR4-NOT transcription complex subunit 7 OS=Gallus... [more]
CNOT7_BOVIN9.242e-3757.35CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CAF1_SCHPO1.577e-3654.81Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT7_DANRE2.689e-3658.09CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7D11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7D11-H22-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053670 ID=CX053670; Name=CX053670; organism=Citrus sinensis; type=EST; length=836bp
CTCTTCTCTCTCCTCTCGCAATTCGTTGACCTCAAAATTTTTCTTCGAAA
GAACACGAAATCACTCAAGATCTGTTCGCTTCGAGTTTTAATTTCATCAA
TCCAAGGTCAGATCTTGTTCATTCACTCATCTCACTCCCTTCACTTTACT
TGCTTTCTTAGGGTTTCAAAAAATCTAATTTTTTTCCCATGTCTTCTTAC
AGATCTGTTGAGAAGTGTTGAAACGGTGACGTTTCTTCCAGCGGAGAGAA
CCCAGTTCAGGTTTTTGAGGTTTCGAGTTACTTATGATCTGTTTACGGAT
CTGGGCGTTTTAGTGTCTATCTTGTTGGTTGGTATTGTTGTTGTTGTTGT
TGTTGTTGTGTTCAGTTTAGGTTTAAAATTTGCTGTCTTGGAAATGTCGG
TTTTGCCTAAGGGGGGCGATGAAATTCAAATTCGAGAGGTGTGGAATGAT
AATCTCGAAGAGGAATTTGCTTTAATTCGTGAAATTGTTGATAAGTATAA
CTATATAGCCATGGATACGGAGTTCCCAGGCGTGGTTTTGCGTCCCGTGG
GAGCTTTTAAGAATATTAATGATTATAACTACCAAACGTTGAAGGATAAC
GTCGACATGTTGAAGTTGATTCAATTGGGTTTAACATTTTCGGATGAAAA
TGGGAATTTGCCTACTTGTGGGACTGACAAGTTTTGCATTTGGCAATTCA
ACTTTCGCGAGTTTAATTTAATTGATGATATTTTTGCTAGTGATTCAGTT
GAGTTGCTGCATCAGTGTGGGATTGATTTTAAGAAGAATAATGAGAAGGG
TATTGATGTGAACCGCTTTGGTGAGCTTTTGATGTC
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