CX053670
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.416e-61 Identity = 112/139 (80.58%), Postives = 126/139 (90.65%), Query Frame = 1 Query: 418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 D I IREVW+ NL EEFALIREIVDK++YIAMDTEFPGVVL+PV FK ND NY+TLK+NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFN+ +DI+AS+S+ELL QCGIDFKKN EKGIDV RFGEL+M Sbjct: 8 DSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMM 146
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 214.927 bits (546), Expect = 4.412e-55 Identity = 102/140 (72.86%), Postives = 118/140 (84.29%), Query Frame = 1 Query: 418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 D IQIREVWNDNLE E ALIRE+VD + ++AMDTEFPG+V RPVG FK +Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF+L DI+A+DS+ELL Q GIDF KNNE GID RF ELLM Sbjct: 8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLM 147
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 4.878e-54 Identity = 99/139 (71.22%), Postives = 116/139 (83.45%), Query Frame = 1 Query: 418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 D IQIREVWNDNL+EE LIR++VD + Y+AMDTEFPG+V+RPVG FK+ DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF+L DIFA DS+ELL Q GID KN GID RF ELLM Sbjct: 8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLM 146
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.795e-48 Identity = 94/145 (64.83%), Postives = 111/145 (76.55%), Query Frame = 1 Query: 418 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIN------DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 D I+IREVWN NLE+E ALI + +D + Y+AMDTEFPG+V + V A N N +YNY TLK NV+MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+I D+FA DS+ELL + ID +KNNE G+D RF ELLM Sbjct: 12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLM 156
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37 Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1 Query: 427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 +I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK+ E+GI+ F ELLM Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3) HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37 Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1 Query: 427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 +I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK+ E+GI+ F ELLM Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37 Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1 Query: 427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 +I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK+ E+GI+ F ELLM Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 9.242e-37 Identity = 78/136 (57.35%), Postives = 99/136 (72.79%), Query Frame = 1 Query: 427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 +I EVW NL+EE IR+++ KYNY+AMDTEFPGVV RP+G F++ DY YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK+ E+GI+ F ELLM Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLM 141
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.577e-36 Identity = 74/135 (54.81%), Postives = 100/135 (74.07%), Query Frame = 1 Query: 430 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 IR+VW+ NL++E LI ++++Y ++MDTEFPGVV RP+G FK+ +DY+YQTL+ NVD LK+IQ+GL SDE GN P + C WQFNF FNL DD++A +S+ELL + GIDFKK+ E GI+ F ELL+ Sbjct: 22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLI 151
BLAST of CX053670 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.689e-36 Identity = 79/136 (58.09%), Postives = 98/136 (72.06%), Query Frame = 1 Query: 427 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLM 834 +I EVW NLEEE IR++ K+NYIAMDTEFPGVV RP+G F++ DY YQ L+ NVD+LK+IQLGLTF +E G P GT WQFNF+ FNL +D++A DS+ELL GI FKK+ E+GI+ F ELLM Sbjct: 11 RICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLM 141 The following BLAST results are available for this feature:
BLAST of CX053670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX053670 ID=CX053670; Name=CX053670; organism=Citrus sinensis; type=EST; length=836bpback to top |