CX053631

Overview
NameCX053631
Unique NameCX053631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_CITSI (Cytochrome c biogenesis protein ccsA OS=Citrus sinensis GN=ccsA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.099e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV
Sbjct:    4 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_EUCGG (Cytochrome c biogenesis protein ccsA OS=Eucalyptus globulus subsp. globulus GN=ccsA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.232e-17
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFS++SI ITI+LI+  VDEI GLY SSE+GMTAT FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSIISIVITIFLISLSVDEIVGLYDSSEKGMTATFFCITGLLVTRWI 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_VITVI (Cytochrome c biogenesis protein ccsA OS=Vitis vinifera GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.584e-17
Identity = 45/58 (77.59%), Postives = 50/58 (86.21%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFSVVSI ITI+LIT LVDEI GL  SSE+GM AT FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSVVSIVITIHLITLLVDEIVGLSDSSEKGMIATFFCITGLLVTRWI 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_SOLLC (Cytochrome c biogenesis protein ccsA OS=Solanum lycopersicum GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.681e-17
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRWV
Sbjct:    4 STLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWV 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_TOBAC (Cytochrome c biogenesis protein ccsA OS=Nicotiana tabacum GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWI 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_SOLTU (Cytochrome c biogenesis protein ccsA OS=Solanum tuberosum GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWI 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_SOLBU (Cytochrome c biogenesis protein ccsA OS=Solanum bulbocastanum GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWI 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_NICSY (Cytochrome c biogenesis protein ccsA OS=Nicotiana sylvestris GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWI 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_ATRBE (Cytochrome c biogenesis protein ccsA OS=Atropa belladonna GN=ccsA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 43/58 (74.14%), Postives = 50/58 (86.21%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFS+VSI ITI+LITFLVDEI  LY SSE+G+  T FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSIVSIVITIHLITFLVDEIVKLYDSSEKGIIVTFFCITGLLVTRWI 61          
BLAST of CX053631 vs. ExPASy Swiss-Prot
Match: CCSA_MORIN (Cytochrome c biogenesis protein ccsA OS=Morus indica GN=ccsA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.985e-17
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = -2
Query:    3 STLERILTHISFSVVSIGITIYLITFLVDEIRGLYASSERGMTATAFCLTGLLITRWV 176
            STLE ILTHISFSVVSI ITI+LIT LVDEI GLY S E+GM  T FC+TGLL+TRW+
Sbjct:    4 STLEHILTHISFSVVSIVITIHLITLLVDEIIGLYDSLEKGMMTTFFCITGLLMTRWI 61          
The following BLAST results are available for this feature:
BLAST of CX053631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CCSA_CITSI6.099e-25100.00Cytochrome c biogenesis protein ccsA OS=Citrus sin... [more]
CCSA_EUCGG1.232e-1774.14Cytochrome c biogenesis protein ccsA OS=Eucalyptus... [more]
CCSA_VITVI3.584e-1777.59Cytochrome c biogenesis protein ccsA OS=Vitis vini... [more]
CCSA_SOLLC4.681e-1775.86Cytochrome c biogenesis protein ccsA OS=Solanum ly... [more]
CCSA_TOBAC6.114e-1774.14Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_SOLTU6.114e-1774.14Cytochrome c biogenesis protein ccsA OS=Solanum tu... [more]
CCSA_SOLBU6.114e-1774.14Cytochrome c biogenesis protein ccsA OS=Solanum bu... [more]
CCSA_NICSY6.114e-1774.14Cytochrome c biogenesis protein ccsA OS=Nicotiana ... [more]
CCSA_ATRBE6.114e-1774.14Cytochrome c biogenesis protein ccsA OS=Atropa bel... [more]
CCSA_MORIN7.985e-1775.86Cytochrome c biogenesis protein ccsA OS=Morus indi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_7C01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-7C01-F2-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX053631 ID=CX053631; Name=CX053631; organism=Citrus sinensis; type=EST; length=828bp
TAAACCCAACGGGTGATTAATAATCCTGTTAGACAGAAAGCGGTAGCTGT
CATCCCCCTTTCTGATGAAGCATATAGCCCTCTGATTTCATCGACTAAGA
AGGTTATTAAATAAATTGTAATTCCAATTGAAACGACCGAAAAGGATATA
TGCGTTAATATACGCTCCAAAGTTGAAAATATCATAAAAAAAAAAAAAAA
ATTAAAAGCGAGAATACCTCAAATATACAGAATGGAAATCATAAATTAAA
TTCCTTAGAGCACTTTTTTTGTATATCTTTTTACAGATGCTATGCCGCCA
CTCGGACTCGAACCGAGATGCTCTAGCACTGCTTCCTAAGAGCAGCGTGT
CTACCGATTTCACCATAGCGGCTTGCTCGAAATCATAATACCCTATTATT
AGTCAATCGTCGAGATTGAAAGAGTCTATTTCAATGGATTTTTATTCATC
AATTTGAAATTTGAATGTTTACTAAAAACAAAAAACATTGAAAGGGCTAT
TTAAAGATTCCGCCCCTTCTTTTGTTGTTGTATTTAATTATTTAAGGTTT
CAGTTTTATTTAACTTAACTTTCAGAGTTTCTTCTTTGATAAACTAGAAC
CTTGTAATGGTTGTAACTAAATAGTTCTAACTTCACTCCAGGGAACAACT
CAAAAAGGGTTTCTTTCTTTTTTTTTTTCATTTTTTAGAACTTTTGTGTT
TGTGTTGTCGTAATTTTAGGTTTTTTCTTTTTTTTTTTCACTATTAATTT
GTCCTAGGATTGATCAAATCAATTAGGTATTGGGCTGCACGTATTATAGA
AAATAAAAAAAAAAATTCTTATTGTTTA
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