DR403542

Overview
NameDR403542
Unique NameDR403542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.295e-28
Identity = 64/142 (45.07%), Postives = 86/142 (60.56%), Query Frame = 2
Query:  353 GSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVA------------EERPVPSFFLCPILQEIMHDPQVAA 742
            G+  Y DPE   +G LTPKSD YSFG+I+L+LLTGR  + ++ EV+ A+  G L+ +LDPLAGDWP   A +L  L L+CCE     RPD+   + + LE +  +            E R  P +F+CPI QE+M DP VAA
Sbjct:  642 GTVAYLDPEASSSGELTPKSDVYSFGIILLRLLTGRPALRISNEVKYALDNGTLNDLLDPLAGDWPFVQAEQLARLALRCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPIFQEVMQDPHVAA 783          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: PUB51_ARATH (U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.442e-27
Identity = 63/161 (39.13%), Postives = 94/161 (58.39%), Query Frame = 2
Query:  308 DTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV--SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH--------------VAEERPVPSFFLCPILQEIMHDPQVAA 742
            D  +  +    T P G+F Y DPEY RTGV+TP+SD Y+FG+I+LQL+T R  +GLA  + +A+    GK + ILD  AGDWP   A+ +V +GL+C E+  R+RPD+   ++  LE+L               +      P+ F CPI +++M +P VA+
Sbjct:  585 DPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLVTARSAMGLAHSIEKALRDQTGKFTEILDKTAGDWPVKEAKEMVMIGLRCAEMRKRDRPDLGKEILPVLERLKEVASIARNMFADNLIDHHHNAPTHFYCPITKDVMENPCVAS 745          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.189e-27
Identity = 62/148 (41.89%), Postives = 86/148 (58.11%), Query Frame = 2
Query:  326 SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERPV---------PSFFLCPILQEIMHDPQVAA 742
            + +R++   G+  Y DPEYHRTG + PKSD Y+FG+IILQLLT R P G+   V  AV  G L+ +LD    DWP      L  +GL+C E   R+RPD+   ++  L++L       V         PS + CPIL+EIM +P++AA
Sbjct:  598 TMYRNSVLAGTLHYIDPEYHRTGTIRPKSDLYAFGIIILQLLTARNPSGIVPAVENAVKKGTLTEMLDKSVTDWPLAETEELARIGLKCAEFRCRDRPDLKSEVIPVLKRLVETANSKVKKEGSNLRAPSHYFCPILREIMEEPEIAA 745          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.685e-25
Identity = 61/152 (40.13%), Postives = 90/152 (59.21%), Query Frame = 2
Query:  326 SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV---SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER----------PVPSFFLCPILQEIMHDPQVAA 742
            + ++ T+P G+  Y DPEY RTG ++PKSD Y+FG+IILQLLTG+  + L   V  A+   +  +L  ILD  AG+WP    R+L  L LQC EL  ++RPD+   ++  LE L    ++            PS F CP+L+++M +P +AA
Sbjct:  618 TMYKQTSPVGTLCYIDPEYQRTGRISPKSDVYAFGMIILQLLTGQQAMALTYTVETAMENNNDDELIQILDEKAGNWPIEETRQLAALALQCTELRSKDRPDLEDQILPVLESLKKVADKARNSLSAAPSQPPSHFFCPLLKDVMKEPCIAA 769          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.527e-24
Identity = 58/157 (36.94%), Postives = 90/157 (57.32%), Query Frame = 2
Query:  305 EDTLYLPSFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEERP----------VPSFFLCPILQEIMHDPQVAA 742
            +D +   +  + T+P G+  Y DPEY RTG+++PKSD YS G++ILQL+T +  + +   V  A+    +  +ILD  AG WP    R L  LGL C E+  R+RPD+   ++  LE+L    ++            PS F+CP+L+ +M++P VAA
Sbjct:  639 QDDVSSRTIFKQTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEEAIGDDAEFMAILDKKAGSWPISDTRELAALGLCCTEMRRRDRPDLKDQIIPALERLRKVADKAQNLLSRTPSGPPSHFICPLLKGVMNEPCVAA 795          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.352e-24
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = 2
Query:  326 SFHRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAV-SCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEER----------PVPSFFLCPILQEIMHDPQVAA 742
            + ++ T+P G+  Y DPEY RTG ++ KSD YSFG+I+LQLLT +  + L   V  A+ S  +   ILD  AG+WP    R L  L L C EL G++RPD+   ++  LE L    E+            P+ F+CP+L+++M++P VAA
Sbjct:  637 TIYKQTSPVGTLCYIDPEYQRTGRISSKSDIYSFGMILLQLLTAKPAIALTHFVESAMDSNDEFLKILDQKAGNWPIEETRELAALALCCTELRGKDRPDLKDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPLLKDVMNEPCVAA 786          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.301e-19
Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  356 SFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSL----------VKELEQLHVAEE---RPVPSFFLCPILQEIMHDPQVAA 742
            S P+ DP Y  +  +T +SD Y+FG+I+LQLLT R   G+  +V+ A+    +S++LD  AGDWP    ++L ++ ++CC+     RPD+   L          V   E    A +   R  PS +LCPI QE+M DP +AA
Sbjct:  614 SDPHVDPHYFVSREMTLESDIYAFGIILLQLLTRRPVSGILRDVKCALENDNISAVLDNSAGDWPVARGKKLANVAIRCCKKNPMNRPDLAVVLRFIDRMKAPEVPSSETSSYANQNVPRRPPSHYLCPIFQEVMKDPLIAA 755          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.423e-13
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 2
Query:  332 HRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV----GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLH---VAEERPVPS 688
            H +T  KG+  Y DPEY+ +  LT KSD YS G++ L++LTG  P+     +  EV  A   G + S++D   G +     +R ++L ++CC+     RP +   +V+ELE ++     EE+P  S
Sbjct:  791 HVTTIVKGTPGYVDPEYYLSHRLTEKSDVYSLGIVFLEILTGMRPISHGRNIVREVNEACDAGMMMSVIDRSMGQYSEECVKRFMELAIRCCQDNPEARPWML-EIVRELENIYGLIPKEEKPYSS 915          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: Y1755_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 2
Query:  341 TAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPVGLAGEVRRAVSC-------GKLSSILDP-LAGDWPTFVARRLVDLGLQCCELYGRERPDIT 628
            T   G+F Y DPEYH+T +L+ KSD YSFG+++L++++G+  + L+ E    V         G + SI+DP L  D+ T  A ++V+L + C     +ERP+++
Sbjct:  718 TVVAGTFGYLDPEYHKTSLLSMKSDVYSFGVVLLEIISGQDVIDLSRENCNIVEWTSFILENGDIESIVDPNLHQDYDTSSAWKVVELAMSCVNRTSKERPNMS 821          
BLAST of DR403542 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 41/118 (34.75%), Postives = 58/118 (49.15%), Query Frame = 2
Query:  332 HRSTAPKGSFPYADPEYHRTGVLTPKSDSYSFGLIILQLLTGRLPV----GLAGEVRRAVSCGKLSSILDPLAGDWPTFVARRLVDLGLQCCELYGRERPDITPSLVKELEQLHVAEE 673
            H ST  KG+  Y DPEY  T  LT KSD YS G+++L+L TG  P+     +  E+  A   G + S +D      P     +   L L+CC    RE  D  PS+ + + +L +  E
Sbjct:  786 HVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINIAYESGSILSTVDKRMSSVPDECLEKFATLALRCC----REETDARPSMAEVVRELEIIWE 899          
The following BLAST results are available for this feature:
BLAST of DR403542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PUB33_ARATH1.295e-2845.07U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB51_ARATH2.442e-2739.13U-box domain-containing protein 51 OS=Arabidopsis ... [more]
PUB34_ARATH3.189e-2741.89U-box domain-containing protein 34 OS=Arabidopsis ... [more]
PUB53_ARATH8.685e-2540.13Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB52_ARATH2.527e-2436.94U-box domain-containing protein 52 OS=Arabidopsis ... [more]
PUB35_ARATH7.352e-2440.00U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB32_ARATH9.301e-1937.32U-box domain-containing protein 32 OS=Arabidopsis ... [more]
Y5374_ARATH3.423e-1334.13Probable LRR receptor-like serine/threonine-protei... [more]
Y1755_ARATH1.101e-1136.54Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH1.438e-1134.75Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241G19 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241G19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403542 ID=DR403542; Name=DR403542; organism=Citrus sinensis; type=EST; length=744bp
GCCGGGGGGAGAAAAATCTTATCATTATTNNNNGNNNNGAACCCAAAGTC
AAGACAAAAGTCAAGCACTCAACGGAAGCTGAGCTTCATTTTCGTAGAAA
CTATAAAATTAACGAGGTACCAAGGAAAGAAAATCTCACTGCTTTTCTTT
TTACGCTTCCCAACTTAACCATCACATGTATGCGTCAATGTCATGACTCA
CCAATAATAATACCCACCTGCGTAACCCGAACCGGAACCCGGACCGGACT
CTACCATTCCTTCAATGGAGGTTCTAAGACCACCGCCACAACACAGGCCG
ACCCGAGGACACCCTTTATTTGCCCAGTTTTCATCGGAGTACTGCGCCAA
AGGGTTCTTTTCCATATGCAGATCCAGAGTACCACAGGACTGGAGTCCTA
ACTCCCAAGTCCGACAGTTACTCCTTTGGGTTGATAATCCTACAGCTACT
TACTGGAAGGCTGCCAGTTGGGTTAGCAGGTGAAGTGCGAAGAGCTGTGT
CGTGCGGGAAGTTATCATCCATTTTGGATCCATTAGCTGGAGATTGGCCT
ACGTTTGTTGCAAGGCGTTTAGTGGACCTGGGATTGCAATGCTGTGAATT
GTACGGTAGGGAGCGACCCGATATCACACCATCTCTGGTAAAGGAATTGG
AACAGCTGCATGTTGCAGAGGAACGACCGGTTCCATCATTCTTTTTGTGC
CCCATTCTTCAGGAAATAATGCATGACCCTCAGGTGGCAGCAGA
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