DR403537

Overview
NameDR403537
Unique NameDR403537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length356
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403537 vs. ExPASy Swiss-Prot
Match: YF64_CAEEL (Uncharacterized protein R102.4 OS=Caenorhabditis elegans GN=R102.4 PE=2 SV=3)

HSP 1 Score: 59.3066 bits (142), Expect = 6.372e-16
Identity = 29/66 (43.94%), Postives = 45/66 (68.18%), Query Frame = 3
Query:   51 DGTMDIDLIXXAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGS 248
            DGTMD++ I  AIR     +  P ++LIC+ENTH   GG+ L +E+  SV ++A++  LK+H+DG+
Sbjct:  173 DGTMDLNDIEQAIRVKDCHM--PASKLICIENTHNYTGGKALPIEWMRSVKQLAERRDLKVHMDGA 236          

HSP 2 Score: 45.0542 bits (105), Expect = 6.372e-16
Identity = 21/37 (56.76%), Postives = 26/37 (70.27%), Query Frame = 1
Query:  244 GARIFNAAVALGVPVLRLVQAADSASVCLSKGLGAPV 354
            GARI+NAAVA    V ++   AD+  +C SKGLGAPV
Sbjct:  235 GARIYNAAVASNCSVSKIASFADTVQMCFSKGLGAPV 271          
BLAST of DR403537 vs. ExPASy Swiss-Prot
Match: LTAA_AERJA (L-allo-threonine aldolase OS=Aeromonas jandaei GN=ltaA PE=1 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.234e-14
Identity = 26/39 (66.67%), Postives = 28/39 (71.79%), Query Frame = 1
Query:  238 LMGARIFNAAVALGVPVLRLVQAADSASVCLSKGLGAPV 354
            L GAR+FNA VA G  V  LV   DS S+CLSKGLGAPV
Sbjct:  167 LDGARLFNAVVASGHTVRELVAPFDSVSICLSKGLGAPV 205          

HSP 2 Score: 48.1358 bits (113), Expect = 4.234e-14
Identity = 25/69 (36.23%), Postives = 41/69 (59.42%), Query Frame = 3
Query:   51 DGTMDIDLIXXAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGSSHF 257
            DG++ +  +  AI     ++ +  TRL+CLENTH    G+ L + Y   + E+  +HGL+LH+DG+  F
Sbjct:  110 DGSLALADVRAAIAPD--DVHFTPTRLVCLENTH---NGKVLPLPYLREMRELVDEHGLQLHLDGARLF 173          
BLAST of DR403537 vs. ExPASy Swiss-Prot
Match: LTAE_ECO57 (Low specificity L-threonine aldolase OS=Escherichia coli O157:H7 GN=ltaE PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.687e-12
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 1
Query:  244 GARIFNAAVALGVPVLRLVQAADSASVCLSKGLGAPV 354
            GARIFNA VA G  +  L Q  DS ++CLSKGLG PV
Sbjct:  167 GARIFNAVVAYGSELKELTQYCDSFTICLSKGLGTPV 203          

HSP 2 Score: 43.5134 bits (101), Expect = 4.687e-12
Identity = 24/69 (34.78%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   51 DGTMDIDLIXXAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGSSHF 257
            DGT+ +D +   I+    +I +  T+L+ LENTH    G+ L  EY     E  ++  L LH+DG+  F
Sbjct:  108 DGTLPLDKVAMKIKPD--DIHFARTKLLSLENTH---NGKVLPREYLKDAWEFTRERNLALHVDGARIF 171          
BLAST of DR403537 vs. ExPASy Swiss-Prot
Match: LTAE_ECOLI (Low specificity L-threonine aldolase OS=Escherichia coli (strain K12) GN=ltaE PE=1 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 6.086e-12
Identity = 22/37 (59.46%), Postives = 26/37 (70.27%), Query Frame = 1
Query:  244 GARIFNAAVALGVPVLRLVQAADSASVCLSKGLGAPV 354
            GARIFNA VA G  +  + Q  DS ++CLSKGLG PV
Sbjct:  167 GARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPV 203          

HSP 2 Score: 43.5134 bits (101), Expect = 6.086e-12
Identity = 24/69 (34.78%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   51 DGTMDIDLIXXAIRDPKGEIVYPTTRLICLENTHANCGGRCLSVEYTDSVGEIAKKHGLKLHIDGSSHF 257
            DGT+ +D +   I+    +I +  T+L+ LENTH    G+ L  EY     E  ++  L LH+DG+  F
Sbjct:  108 DGTLPLDKVAMKIKPD--DIHFARTKLLSLENTH---NGKVLPREYLKEAWEFTRERNLALHVDGARIF 171          
The following BLAST results are available for this feature:
BLAST of DR403537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YF64_CAEEL6.372e-1643.94Uncharacterized protein R102.4 OS=Caenorhabditis e... [more]
LTAA_AERJA4.234e-1466.67L-allo-threonine aldolase OS=Aeromonas jandaei GN=... [more]
LTAE_ECO574.687e-1262.16Low specificity L-threonine aldolase OS=Escherichi... [more]
LTAE_ECOLI6.086e-1259.46Low specificity L-threonine aldolase OS=Escherichi... [more]
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Properties
Property NameValue
Genbank descriptionCSAC-PNP1241G13 Mature Albedo Citrus sinensis cDNA clone CSAC-PNP1241G13 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403537 ID=DR403537; Name=DR403537; organism=Citrus sinensis; type=EST; length=356bp
GGGTCAACAATTGTGAGGGGTGCATCCAAGGACTGTCAAGAACNNCCAAC
GATGGAACAATGGATATTGATTTAATTGANNCTGCCATTAGAGATCCGAA
AGGCGAGATTGTGTACCCGACAACTCGACTTATCTGTTTGGAGAATACGC
ATGCAAACTGCGGTGGTAGATGCCTTTCTGTAGAATACACGGACAGTGTT
GGAGAGATTGCCAAGAAGCATGGTTTAAAGCTTCACATTGATGGGAGCTC
GCATTTTCAATGCAGCAGTTGCGCTTGGTGTTCCTGTTCTCAGGCTTGTA
CAGGCGGCTGATTCAGCTTCGGTATGCCTGTCAAAAGGTCTTGGTGCTCC
TGTTGG
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