DN621624

Overview
NameDN621624
Unique NameDN621624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621624_ssr126 microsatellite DN621624_ssr126:126..137. BLAST: Citrus ESTs to Prunus persica proteins V1
DN621624_ssr66 microsatellite DN621624_ssr66:66..77. BLAST: Citrus ESTs to Prunus persica proteins V1
DN621624_ssr230 microsatellite DN621624_ssr230:230..241. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6065 contig Csv1_Contig6065:1..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621624 vs. ExPASy Swiss-Prot
Match: UBQL_DICDI (Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  399 NIRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVRG 605
            NI+ S   KF VD++L  +V  FK  +A KC +P  QQR+IY GRILKD QTL    ++  HTVHLV+G
Sbjct:    5 NIKSSTDNKFDVDVELGITVADFKKVIATKCSIPADQQRIIYSGRILKDHQTLDEIKIQDGHTVHLVKG 73
[Close]
BLAST of DN621624 vs. ExPASy Swiss-Prot
Match: DSK2_SCHPO (Deubiquitination-protection protein dph1 OS=Schizosaccharomyces pombe GN=dph1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 29/67 (43.28%), Postives = 49/67 (73.13%), Query Frame = 3 
Query:  402 IRCSNGTKFSVDIDLESSVETFKAALAEKCEVPPQQQRLIYKGRILKDDQTLKSYGLEADHTVHLVR 602
            I+ +N  K++V +D ESSV   K A+A   ++  ++QRLIY GR+LKD+++LK+Y ++  H++HLV+
Sbjct:    8 IKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVK 74
The following BLAST results are available for this feature:
BLAST of DN621624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UBQL_DICDI6.406e-1452.17Ubiquilin OS=Dictyostelium discoideum GN=ubqln PE=... [more]
DSK2_SCHPO5.076e-1143.28Deubiquitination-protection protein dph1 OS=Schizo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06P12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621624 ID=DN621624; Name=DN621624; organism=Citrus sinensis; type=EST; length=710bp
GTCTCGAGAGAGTAACGCAAACTCGCGCCTCTAACTGACCTCCGGATTCT
TCATTCACCACAACCAACAAACAAACAACGTTTATTGTACCGTCTTAGGT
GGGTTAAGTTTTACTTAAAACTAAACTCTCTCTCTCTCACACGCGATTCC
CTCATACATACAAATTTCGTTTTTTTTTTTCCTCTCTTTCTATGATCCGA
TTTCGATTTATTAATATATACTAATATAGAAATAAATAAATATATATTTT
TTAAAGGGTTAGGGTTTCGTAAATTTGATCGATCGGCTTGCTTTTTGTTT
TATTTATTTTCAAAGTTATTGGATTCGTTGGGCCTCCGGCAGGGATGGGG
GCTGGAGATGAGGTAAGCGAATCGAGCGGAGGAGAGGGAGTAAAGGTGAA
TATCCGATGCTCGAACGGCACAAAATTTTCGGTGGATATCGATCTGGAAT
CCAGCGTTGAAACATTCAAAGCGGCGTTGGCGGAAAAGTGCGAGGTTCCG
CCTCAGCAACAGCGGTTGATTTATAAAGGTCGGATCTTGAAGGACGATCA
AACCCTCAAAAGCTATGGTTTGGAGGCAGATCACACTGTGCACTTGGTTC
GTGGTTTTGCACCTGCTGCATCTACAAACAATGCTGCGCCAACCGACTCT
GGAGGTTCAACTACTACTCCCAACAGCACAAGGCCCGTGAGTACTAATGA
AGGTGATGCT
back to top