CX052854

Overview
NameCX052854
Unique NameCX052854
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_CITSI (Cytochrome b6 OS=Citrus sinensis GN=petB PE=3 SV=2)

HSP 1 Score: 408.683 bits (1049), Expect = 1.890e-113
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_MORIN (Cytochrome b6 OS=Morus indica GN=petB PE=3 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.730e-112
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTETNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_EUCGG (Cytochrome b6 OS=Eucalyptus globulus subsp. globulus GN=petB PE=3 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 2.730e-112
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_OENEH (Cytochrome b6 OS=Oenothera elata subsp. hookeri GN=petB PE=3 SV=2)

HSP 1 Score: 403.675 bits (1036), Expect = 6.081e-112
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_MAIZE (Cytochrome b6 OS=Zea mays GN=petB PE=2 SV=2)

HSP 1 Score: 403.675 bits (1036), Expect = 6.081e-112
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_TOBAC (Cytochrome b6 OS=Nicotiana tabacum GN=petB PE=2 SV=2)

HSP 1 Score: 403.29 bits (1035), Expect = 7.942e-112
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQ+GYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_WHEAT (Cytochrome b6 OS=Triticum aestivum GN=petB PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.355e-111
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_SPIOL (Cytochrome b6 OS=Spinacia oleracea GN=petB PE=1 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.355e-111
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVT+AFASVQYIMTEVNFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVL VLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTDAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_ORYSJ (Cytochrome b6 OS=Oryza sativa subsp. japonica GN=petB PE=3 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.355e-111
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
[Close]
BLAST of CX052854 vs. ExPASy Swiss-Prot
Match: CYB6_ORYSI (Cytochrome b6 OS=Oryza sativa subsp. indica GN=petB PE=3 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.355e-111
Identity = 198/202 (98.02%), Postives = 200/202 (99.01%), Query Frame = 1 
Query:    1 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMTILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 606
            IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAF+SVQYIMTE NFGWLIRSVHRWSASMMVLM ILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVP+AIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
Sbjct:   14 IQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL 215
The following BLAST results are available for this feature:
BLAST of CX052854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYB6_CITSI1.890e-113100.00Cytochrome b6 OS=Citrus sinensis GN=petB PE=3 SV=2[more]
CYB6_MORIN2.730e-11299.01Cytochrome b6 OS=Morus indica GN=petB PE=3 SV=1[more]
CYB6_EUCGG2.730e-11299.01Cytochrome b6 OS=Eucalyptus globulus subsp. globul... [more]
CYB6_OENEH6.081e-11298.51Cytochrome b6 OS=Oenothera elata subsp. hookeri GN... [more]
CYB6_MAIZE6.081e-11298.51Cytochrome b6 OS=Zea mays GN=petB PE=2 SV=2[more]
CYB6_TOBAC7.942e-11298.02Cytochrome b6 OS=Nicotiana tabacum GN=petB PE=2 SV... [more]
CYB6_WHEAT1.355e-11198.02Cytochrome b6 OS=Triticum aestivum GN=petB PE=2 SV... [more]
CYB6_SPIOL1.355e-11198.02Cytochrome b6 OS=Spinacia oleracea GN=petB PE=1 SV... [more]
CYB6_ORYSJ1.355e-11198.02Cytochrome b6 OS=Oryza sativa subsp. japonica GN=p... [more]
CYB6_ORYSI1.355e-11198.02Cytochrome b6 OS=Oryza sativa subsp. indica GN=pet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_48D10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-48D10-G19-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX052854 ID=CX052854; Name=CX052854; organism=Citrus sinensis; type=EST; length=790bp
ATTCAGGCGATTGCAGATGATATAACTAGTAAATACGTTCCTCCTCATGT
CAACATATTTTATTGTCTGGGAGGAATTACGCTCACTTGTTTTTTAGTAC
AAGTAGCTACAGGGTTTGCTATGACTTTTTACTACCGCCCGACCGTTACT
GAGGCTTTTGCCTCTGTTCAATACATAATGACGGAAGTTAACTTCGGGTG
GTTAATTCGATCGGTTCATCGATGGTCGGCAAGTATGATGGTCCTAATGA
CAATCCTGCACGTATTTCGCGTGTATCTCACCGGGGGTTTTAAAAAACCT
CGCGAATTGACTTGGGTTACAGGTGTGGTTCTGGCTGTATTGACCGCATC
TTTTGGTGTAACAGGTTATTCTTTACCTTGGGACCAAATTGGATATTGGG
CAGTAAAAATTGTAACAGGCGTGCCCGAAGCAATTCCGGTAATAGGATCG
CCTTTGGTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAGTCCACTTT
GACTCGTTTTTATAGTTTACACACTTTTGTATTACCTCTTCTTACTGCCG
TATTTATGTTAATGCATTTCCTAATGATACGTAAACAAGGTATTTCTGGC
CCTTTATAAAATTATACAAAATCTAGATTATAGCGATTTGTAATCAACCC
TTTATCTTATTGCTTGGGGGAGGAACAATAATATTTCATTGCTACAAATA
TGGATTATTGACAAAGAATAAGACATGGAGTTGGAAATTTCCCCTCAACT
CCATAATATTGGACTTTTTATTTGACATGAATGAAATCCT
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