DN621229

Overview
NameDN621229
Unique NameDN621229
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621229 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.575e-12
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = -2 
Query:  230 NVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 487
            ++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  414 HIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502
[Close]
BLAST of DN621229 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.021e-11
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = -2 
Query:  242 NVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 487
            ++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  413 HITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493
The following BLAST results are available for this feature:
BLAST of DN621229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DCE_SOLLC1.575e-1240.45Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE_PETHY1.021e-1145.12Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06G21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621229 ID=DN621229; Name=DN621229; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTTTTTGACAATAATTAATTTATTGAAAGACAACGTAATAAGC
AATAAGCATATACCTCTATTTGCCACTTCACAAGCGTGCAAGAAAACATA
AATAGGCTTCAACAATCACATAAAGTAAACACACCTTCAAGTACGAATAT
ACAGAAAACAGGAAGAAGCAATAGCTTTAATATTCAAACAAGCATACAAA
TCTTGTCTCATCTTATGTTTGGAACCTCAGCATGCTCCAGCTCTCCGGCC
TTTCACGAACCTCTTCCAGTGCCTGGTGACTTCCTCCTGAGTCTCCCTCA
CACTCTTCTTAAGTGGCTTATCACCCTGAGTTTCGTTGACCATGGGTATG
ACATGGGCAGTTTTTGTGGATACACGACTTGGAAGCGATTCAATTTCCTT
CAAAACTTCCTCGATGTGTGAGATGAGTCTTTCCACCAAGCTACGGCTGA
AATCCTCCCTGACAACCACCCGAAGAACCGCCACATTT
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