FC922040

Overview
NameFC922040
Unique NameFC922040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length368
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4023 contig Csv1_Contig4023:134..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.089e-49
Identity = 94/104 (90.38%), Postives = 100/104 (96.15%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            IFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQ
Sbjct:   44 IFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQ 147          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.268e-49
Identity = 94/104 (90.38%), Postives = 99/104 (95.19%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQ
Sbjct:   44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQ 147          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 8.986e-49
Identity = 92/104 (88.46%), Postives = 99/104 (95.19%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            IFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQ
Sbjct:   44 IFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQ 147          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.174e-48
Identity = 93/104 (89.42%), Postives = 99/104 (95.19%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            IFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQ
Sbjct:   44 IFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQ 147          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 7.872e-45
Identity = 87/104 (83.65%), Postives = 94/104 (90.38%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            IFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQ
Sbjct:   44 IFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQ 147          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 75/104 (72.12%), Postives = 88/104 (84.62%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            I PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQ
Sbjct:   40 ISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQ 143          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 4.787e-34
Identity = 71/104 (68.27%), Postives = 84/104 (80.77%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ
Sbjct:   46 IAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQ 149          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.376e-33
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = -2
Query:    2 FPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 310
            FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q
Sbjct:   46 FPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQ 148          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 1.304e-31
Identity = 65/104 (62.50%), Postives = 83/104 (79.81%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIG+SVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ
Sbjct:   46 IAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQ 149          
BLAST of FC922040 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 1.703e-31
Identity = 66/104 (63.46%), Postives = 81/104 (77.88%), Query Frame = -2
Query:    2 IFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQ 313
            I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ
Sbjct:   46 IAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQ 149          
The following BLAST results are available for this feature:
BLAST of FC922040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL133_ARATH3.089e-4990.3860S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_BRANA5.268e-4990.3860S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_ARATH8.986e-4988.4660S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL131_BRANA1.174e-4889.4260S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL132_ARATH7.872e-4583.65Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC3.542e-3772.1260S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_DANRE4.787e-3468.2760S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_CHLSW2.376e-3365.0560S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_CHICK1.304e-3162.5060S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_ICTPU1.703e-3163.4660S ribosomal protein L13 OS=Ictalurus punctatus G... [more]

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Properties
Property NameValue
Genbank descriptionC06056H03T7 RindPdigS Citrus sinensis cDNA clone C06056H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922040 ID=FC922040; Name=FC922040; organism=Citrus sinensis; type=EST; length=368bp
CTTGAGTTGCTGTTGCCAATTCCTCAGGAGCCGAATCACCAGCCTTAAAC
TTGCGAGCACGTCTTGGGAAAACAACCAACTTAGCCTTGTAAGTCTTGAG
CCTCTGAACATTAGATTGAAGACCCTCAAGAGAACGGTTCTTGCGTCGAT
GATCGACTGAAACACCAATTGTCGGAGCCAGTTTCTTGGGAATTCCAGCA
GCCTTGAGTTCCTCAAGAGTAAAGCCTCTGCCAGCCCTTAATTTCATGTT
GTATTTCAAAGTCTGGCCATGAACGACGGGACGAAGCGGCCCAGCAGTAG
GGCGAGGGAAGATTTTAACGGCCTTCTTTTGACGAGCGACTCGTCGTCGA
TTTTTGCGAGCAGCCCGC
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