FC922035

Overview
NameFC922035
Unique NameFC922035
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8442 contig Csv1_Contig8442:479..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922035 vs. ExPASy Swiss-Prot
Match: K6PF3_ARATH (6-phosphofructokinase 3 OS=Arabidopsis thaliana GN=PFK3 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.223e-46
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = -3
Query:    6 QKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTHEGVNDIHKRGGTV 299
            QK+VVHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIREIV SL YMYGVKR+LGIDGGYRGFYAKNT++L  + VNDIHKRGGT+
Sbjct:   62 QKIVVHKDGPRGIHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREIVSSLSYMYGVKRILGIDGGYRGFYAKNTVSLDSKVVNDIHKRGGTI 159          
BLAST of FC922035 vs. ExPASy Swiss-Prot
Match: K6PF7_ARATH (6-phosphofructokinase 7 OS=Arabidopsis thaliana GN=PFK7 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.232e-45
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = -3
Query:    6 QKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTHEGVNDIHKRGGTV 299
            +KVVVHKD PRG HFRRAGPRQKVYFESDEV+ACIVTCGGLCPGLNTVIRE+V SL YMYGVKR+LGIDGGYRGFYAKNTI L  + VNDIHKRGGT+
Sbjct:   62 EKVVVHKDGPRGVHFRRAGPRQKVYFESDEVHACIVTCGGLCPGLNTVIREVVSSLSYMYGVKRILGIDGGYRGFYAKNTIPLNSKVVNDIHKRGGTI 159          
BLAST of FC922035 vs. ExPASy Swiss-Prot
Match: K6PF1_ARATH (6-phosphofructokinase 1 OS=Arabidopsis thaliana GN=PFK1 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.382e-43
Identity = 80/98 (81.63%), Postives = 88/98 (89.80%), Query Frame = -3
Query:    6 QKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTHEGVNDIHKRGGTV 299
            QK+VVH DSPRGTHFRRAGPRQ+VYFESD+V ACIVTCGGLCPGLNTVIREIV  L YMYGVKR+LGIDGGYRGFYA+NTI L  + VNDIH+ GGT+
Sbjct:   63 QKIVVHPDSPRGTHFRRAGPRQRVYFESDDVLACIVTCGGLCPGLNTVIREIVCGLSYMYGVKRILGIDGGYRGFYARNTIHLDLKTVNDIHRSGGTI 160          
BLAST of FC922035 vs. ExPASy Swiss-Prot
Match: K6PF6_ARATH (6-phosphofructokinase 6 OS=Arabidopsis thaliana GN=PFK6 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.137e-41
Identity = 74/98 (75.51%), Postives = 88/98 (89.80%), Query Frame = -3
Query:    6 QKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTHEGVNDIHKRGGTV 299
            +K+VVHKDSPRGTHFRRAGPRQKVYF+  +V ACIVTCGGLCPGLNTVIREIV  L++MYGV  V+G+D G+RGFY+KNT+ALT + V+DIHKRGGT+
Sbjct:   63 EKIVVHKDSPRGTHFRRAGPRQKVYFKPSDVRACIVTCGGLCPGLNTVIREIVCGLHFMYGVTEVIGVDCGFRGFYSKNTVALTPKTVSDIHKRGGTI 160          
BLAST of FC922035 vs. ExPASy Swiss-Prot
Match: K6PF4_ARATH (6-phosphofructokinase 4, chloroplastic OS=Arabidopsis thaliana GN=PFK4 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.593e-37
Identity = 72/97 (74.23%), Postives = 80/97 (82.47%), Query Frame = -3
Query:    9 QKVVVHKDSPRGTHFRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTHEGVNDIHKRGGT 299
            Q +VV K S RG HFRRAGPR++VYF SDEV ACIVTCGGLCPG+NTVIREIV  L  MYGV  +LGI GGYRGFY+KNT+ LT + VNDIHKRGGT
Sbjct:  113 QNIVVQKGSKRGVHFRRAGPRERVYFRSDEVKACIVTCGGLCPGINTVIREIVCGLNNMYGVNNILGIQGGYRGFYSKNTMNLTPKVVNDIHKRGGT 209          
BLAST of FC922035 vs. ExPASy Swiss-Prot
Match: K6PF2_ARATH (6-phosphofructokinase 2 OS=Arabidopsis thaliana GN=PFK2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.579e-23
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = -3
Query:    6 FRRAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKNTIALTHEGVNDIHKRGGTV 257
            + RAGPR+++ +E   V A IVTCGGLCPG+NTVIRE+V  L+ +YGV+ + GI  GYRGFY+   + L  + V+D HK+GGTV
Sbjct:   61 YHRAGPRREIMYEPSAVKAAIVTCGGLCPGMNTVIRELVVGLWELYGVREIYGIPAGYRGFYSMKAVKLDPKAVHDWHKKGGTV 144          
BLAST of FC922035 vs. ExPASy Swiss-Prot
Match: K6PF5_ARATH (6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 46/84 (54.76%), Postives = 61/84 (72.62%), Query Frame = -3
Query:    6 RAGPRQKVYFESDEVYACIVTCGGLCPGLNTVIREIVYSLYYMYGVKRVLGIDGGYRGFYAKN--TIALTHEGVNDIHKRGGTV 251
            RAGPR+K+YF  +EV A I+TCGGLCPGLN VIR IV +L  +YGVK ++GI  GYRGF  K+   + L+ + V +IH  GG++
Sbjct:  166 RAGPREKIYFRPEEVKAAIITCGGLCPGLNDVIRHIVITL-EIYGVKNIVGIPFGYRGFSDKDLTEMPLSRKVVQNIHLSGGSL 248          
The following BLAST results are available for this feature:
BLAST of FC922035 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
K6PF3_ARATH7.223e-4685.716-phosphofructokinase 3 OS=Arabidopsis thaliana GN... [more]
K6PF7_ARATH1.232e-4585.716-phosphofructokinase 7 OS=Arabidopsis thaliana GN... [more]
K6PF1_ARATH4.382e-4381.636-phosphofructokinase 1 OS=Arabidopsis thaliana GN... [more]
K6PF6_ARATH9.137e-4175.516-phosphofructokinase 6 OS=Arabidopsis thaliana GN... [more]
K6PF4_ARATH3.593e-3774.236-phosphofructokinase 4, chloroplastic OS=Arabidop... [more]
K6PF2_ARATH6.579e-2354.766-phosphofructokinase 2 OS=Arabidopsis thaliana GN... [more]
K6PF5_ARATH2.860e-1854.766-phosphofructokinase 5, chloroplastic OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionC06056G10T7 RindPdigS Citrus sinensis cDNA clone C06056G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922035 ID=FC922035; Name=FC922035; organism=Citrus sinensis; type=EST; length=301bp
CCACGGACGGTTCCACCACGTTTATGGATGTCATTCACACCCTCATGTGT
TAGAGCAATTGTATTTTTAGCATAAAAGCCCCTGTATCCTCCATCAATTC
CCAGCACTCTCTTCACTCCATACATGTAGTAAAGACTGTAAACTATCTCT
CTAATCACCGTGTTGAGTCCAGGGCATAAGCCACCACATGTTACGATACA
AGCATAAACTTCATCTGACTCAAAATACACCTTTTGACGAGGTCCAGCTC
TTCGGAAGTGAGTCCCTCTTGGACTATCCTTATGAACAACAACCTTTTGT
G
back to top