EY667985

Overview
NameEY667985
Unique NameEY667985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 58/202 (28.71%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E   ++     L      SD V+ + +A N GR + ++AVA
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 58/202 (28.71%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E   ++     L      SD V+ + +A N GR + ++AVA
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.532e-18
Identity = 58/202 (28.71%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E   ++     L      SD V+ + +A N GR + ++AVA
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGRSFHILAVA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 60/202 (29.70%), Postives = 93/202 (46.04%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G  +S+T      +++E+ E   ++  V  L      +D V+ + +A N GR + V+A+A
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGRSFHVLAIA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 56/202 (27.72%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E   ++     L      +D V+ + +A N GR + ++A+A
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 56/202 (27.72%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E   ++     L      +D V+ + +A N GR + ++A+A
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHSPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAIA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 56/202 (27.72%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K SC  + ISWNP           +G +  +P  +   +++E++E   ++     L      +D V+ + +A N GR + ++A+A
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEIS---------CKLSC--SCISWNPSSSRAHAPMIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLLTV---TDPVHDIAFAPNLGRSFHILAIA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.116e-16
Identity = 58/202 (28.71%), Postives = 92/202 (45.54%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTP-QLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F      L L    +DG V+VYE  D + L  W LQ E       V+     SC    ISWNP           +G +  +P  +   +++E++E   ++     L      +D V+ + +A N GR + ++AVA
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQHE-------VSCKLCCSC----ISWNPSSSRAHPPMIAVGSDDSSPNSMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHILAVA 241          
BLAST of EY667985 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.236e-16
Identity = 60/203 (29.56%), Postives = 91/203 (44.83%), Query Frame = 1
Query:   55 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV--WEFDEAHNRWLPVAELALPEDRSDEVYAVTWALNFGRPYDVIAVA 642
            K H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +DG V++YE  D + L  W LQ E            K +C  + ISWNP           +G   D+    S KV   E++E   ++     L      +D V+ + +A N GR + V+A+A
Sbjct:   54 KTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQHEIS---------CKLAC--SCISWNPSSSRAHPPMIAVG-GDDSNGAYSGKVQIHEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGRSFHVLAIA 241          
The following BLAST results are available for this feature:
BLAST of EY667985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SEH1_XENTR4.532e-1828.71Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1B_XENLA4.532e-1828.71Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA4.532e-1828.71Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_OSMMO1.010e-1729.70Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_PONAB2.938e-1727.72Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN2.938e-1727.72Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_BOVIN2.938e-1727.72Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_MOUSE1.116e-1628.71Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_DANRE7.236e-1629.56Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-044-H09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY667985 ID=EY667985; Name=EY667985; organism=Citrus sinensis; type=EST; length=864bp
CCCGCGTCCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGTCAA
AACTAAGGTACATGCGGGTGCCATTTTAAAGGTTGTTTGGGTGCCACCGG
AGTTCGGTGACGCGGTTGCCTGTATTTGCTCGGATGGAAGTTTGTTGTTG
TGGGAAGAGATTGTTGAAGATGCACAGCCTCTGCAGTGGAAGCTCTGTAA
GAGCTTTGAAAGCACTTCGACTCAAGTGTTAGATGTTCAATTTGGAGTCT
CTTCCACAAGTTTGAAATTGGTTGCTGCATACTCAGATGGCCATGTTAAA
GTTTATGAGCTCCTAGATCCCTTGATACTGAAAAATTGGCAACTTCAGGC
TGAATTTCAGAATGCTATTGATTCTGTGACTATGTTTAGGAAGGCTTCAT
GCATATCGGCATCCATTTCTTGGAATCCACAGAAGGGTGAAAACCAGGGA
TCTAGTTTTGTTCTCGGGTTCAATTCAGACACACCACAACTCAATTCCTC
CAAGGTATGGGAGTTTGATGAGGCTCATAATAGATGGCTACCAGTGGCAG
AGTTGGCTTTGCCTGAGGACAGGAGTGATGAGGTTTATGCTGTTACCTGG
GCACTAAACTTCGGACGGCCATATGATGTGATAGCTGTTGCCCCTCCCAA
CGCCCTTGCCATTTGGCATGTTGCAGCCAACCCCGGGTTGGATGCAAAGC
TTCCCCAATAACCGGCTGCGTTTGTTCCTTGGCCCAGGCAGGCGAGCGTG
GTGACACGGACCGGCATCCGTCGGGAAAACGTCCTCCCCTACCCGCATGC
GTCCGAATCGTACGCAAGCGACGCCCTAGCGAGGCGACGTCTAGCGCGGA
GGGCCGAATGCCCG
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