FC922022

Overview
NameFC922022
Unique NameFC922022
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length350
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12295 contig Csv1_Contig12295:910..1259. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: PEPD_HUMAN (Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 1.019e-39
Identity = 74/114 (64.91%), Postives = 89/114 (78.07%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSL 349
            + SDITCSFP NGKFT+DQ  +Y AVL++  AV+ AMKPGV W DMH+LA++I LE L   G++ G+VD M+   LGAVFMPHGLGHFLGID HD GGYP+G ER  EPGL+SL
Sbjct:  284 FASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSL 397          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: PEPD_RAT (Xaa-Pro dipeptidase OS=Rattus norvegicus GN=Pepd PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.471e-38
Identity = 72/114 (63.16%), Postives = 88/114 (77.19%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSL 349
            + SDITCSFP NGKFT DQ  IY AVL++   V++ MKPGV W DMH+LA++I LE L + G++ G+VD M+   LGAVFMPHGLGHFLG+D HD GGYP+G ER  EPGL+SL
Sbjct:  284 FASDITCSFPANGKFTDDQKAIYEAVLRSCRTVMSTMKPGVWWPDMHRLADRIHLEELTRIGLLSGSVDAMLQVHLGAVFMPHGLGHFLGLDVHDVGGYPEGVERIDEPGLRSL 397          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: PEPD_MOUSE (Xaa-Pro dipeptidase OS=Mus musculus GN=Pepd PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 1.471e-38
Identity = 72/114 (63.16%), Postives = 88/114 (77.19%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSL 349
            + SDITCSFP NGKFT DQ  IY AVL++   V++ MKPGV W DMH+LA++I LE L + G++ G+VD M+   LGAVFMPHGLGHFLG+D HD GGYP+G ER  EPGL+SL
Sbjct:  284 FASDITCSFPANGKFTEDQKAIYEAVLRSCRTVMSTMKPGVWWPDMHRLADRIHLEELARIGLLSGSVDAMLQVHLGAVFMPHGLGHFLGLDVHDVGGYPEGVERIDEPGLRSL 397          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: PEPD_PONAB (Xaa-Pro dipeptidase OS=Pongo abelii GN=PEPD PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.589e-38
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSL 349
            + SDITCSFP NGKFT+DQ  +Y AVL++  AV+ AMKPGV W DM +LA++I LE L   G++ G+VD M+   LGAV MPHGLGHFLGID HD GGYP+G ER  EPGL+SL
Sbjct:  284 FASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMRRLADRIHLEELAHTGILSGSVDAMVQAHLGAVSMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSL 397          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: PEPD_DICDI (Xaa-Pro dipeptidase OS=Dictyostelium discoideum GN=pepd PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.234e-33
Identity = 60/99 (60.61%), Postives = 80/99 (80.81%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGY 304
            Y +DITCSFP  GKF+ +Q ++Y AVL A  AV+ AM+PGV WVDMHKLAE+ IL +L K G++VG++ +++A ++G+VF PHGLGHFLG+DTHD GGY
Sbjct:  307 YTADITCSFPATGKFSPEQRVVYQAVLDASVAVMEAMRPGVSWVDMHKLAERCILAALLKAGILVGDLQDLIANKIGSVFFPHGLGHFLGLDTHDVGGY 405          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: YFH6_YEAST (Uncharacterized peptidase YFR006W OS=Saccharomyces cerevisiae GN=YFR006W PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.766e-18
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG--NVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYP 307
            Y SDIT  FP +GKFT++   +Y  VL   N  +  +KPG  W D+H L  K++++     G+     + DE+   R    F PHGLGH LG+D HD GG P
Sbjct:  324 YTSDITRCFPTSGKFTAEHREVYETVLDMQNQAMERIKPGAKWDDLHALTHKVLIKHFLSMGIFKKEFSEDEIFKRRASCAFYPHGLGHMLGLDVHDVGGNP 425          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: AMPP_ECOLI (Xaa-Pro aminopeptidase OS=Escherichia coli (strain K12) GN=pepP PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.431e-17
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGL 340
            Y  DIT +FPVNGKFT  Q  IY+ VL++    +   +PG   +++     +I++  L K G++ G+VDE++A      F  HGL H+LG+D HD G Y +   R  EPG+
Sbjct:  269 YAGDITRTFPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGM 379          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: AMPP_HAEIN (Xaa-Pro aminopeptidase OS=Haemophilus influenzae GN=pepP PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.984e-15
Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGL 340
            Y  DIT +FPVNGKF+  Q  IY  VLKA    I  + PG      +    +I  + L   G++ G+VD ++  +    F  HGLGH+LG+D HD G Y +  +R  E G+
Sbjct:  262 YAGDITRTFPVNGKFSQPQREIYELVLKAQKRAIELLVPGNSIKQANDEVIRIKTQGLVDLGILKGDVDTLIEQQAYRQFYMHGLGHWLGLDVHDVGSYGQDKQRILEIGM 372          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: XPP3_DICDI (Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium discoideum GN=xpnpep3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.223e-13
Identity = 44/111 (39.64%), Postives = 62/111 (55.86%), Query Frame = 2
Query:    8 YGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGL 340
            Y SDIT +FPV+GKFT  QS +Y AVL  +   I   KPG     +H  + ++I   LK+ G++  N       RL   + PH +GH+LG+DTHD   +  G   + EPG+
Sbjct:  353 YTSDITRTFPVSGKFTEAQSEVYQAVLDVNKKCIELCKPGETINSIHLKSVELIQAHLKRLGII--NESNPNDYRL---YYPHSIGHYLGMDTHDTLDFDYGV--TLEPGM 456          
BLAST of FC922022 vs. ExPASy Swiss-Prot
Match: AMPP1_STRLI (Xaa-Pro aminopeptidase 1 OS=Streptomyces lividans GN=pepPI PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.127e-13
Identity = 39/122 (31.97%), Postives = 65/122 (53.28%), Query Frame = 2
Query:    5 FYGSDITCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMATRLGAVFMPHGLGHFLGIDTHD----------PGGYPKGTERSKEPGL 340
            +Y +D+T + P++G ++  Q  IY+AV  A  A I A++PG  + D H  +++++ E L + G++ G V+ ++   L   +  HG GH LG+D HD           G    G   + EPGL
Sbjct:  316 YYTADVTRTLPISGTYSELQKKIYDAVYDAQEAGIAAVRPGAKYRDFHDASQRVLAERLVEWGLVEGPVERVLELGLQRRWTLHGTGHMLGMDVHDCAAARVESYVDGTLEPGMVLTVEPGL 437          
The following BLAST results are available for this feature:
BLAST of FC922022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PEPD_HUMAN1.019e-3964.91Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 S... [more]
PEPD_RAT1.471e-3863.16Xaa-Pro dipeptidase OS=Rattus norvegicus GN=Pepd P... [more]
PEPD_MOUSE1.471e-3863.16Xaa-Pro dipeptidase OS=Mus musculus GN=Pepd PE=2 S... [more]
PEPD_PONAB5.589e-3863.16Xaa-Pro dipeptidase OS=Pongo abelii GN=PEPD PE=2 S... [more]
PEPD_DICDI9.234e-3360.61Xaa-Pro dipeptidase OS=Dictyostelium discoideum GN... [more]
YFH6_YEAST3.766e-1841.18Uncharacterized peptidase YFR006W OS=Saccharomyces... [more]
AMPP_ECOLI1.431e-1739.64Xaa-Pro aminopeptidase OS=Escherichia coli (strain... [more]
AMPP_HAEIN2.984e-1538.74Xaa-Pro aminopeptidase OS=Haemophilus influenzae G... [more]
XPP3_DICDI6.223e-1339.64Probable Xaa-Pro aminopeptidase 3 OS=Dictyostelium... [more]
AMPP1_STRLI8.127e-1331.97Xaa-Pro aminopeptidase 1 OS=Streptomyces lividans ... [more]

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Properties
Property NameValue
Genbank descriptionC06056F09T7 RindPdigS Citrus sinensis cDNA clone C06056F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922022 ID=FC922022; Name=FC922022; organism=Citrus sinensis; type=EST; length=350bp
CCAATTTTACGGGTCTGACATTACTTGCTCATTCCCTGTAAATGGGAAGT
TTACTAGTGATCAGAGTCTTATATATAATGCCGTCCTCAAAGCTCACAAT
GCTGTCATAAATGCAATGAAACCTGGAGTGTGCTGGGTGGATATGCACAA
ATTGGCAGAGAAAATTATTCTGGAGTCGCTGAAGAAGGGTGGTGTCATGG
TTGGGAATGTGGATGAGATGATGGCTACACGATTGGGTGCTGTTTTCATG
CCTCATGGTCTTGGGCATTTCTTGGGTATTGACACTCATGATCCTGGCGG
CTACCCAAAGGGAACAGAAAGATCAAAAGAACCTGGCTTAAAATCTCTAC
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