FC922018

Overview
NameFC922018
Unique NameFC922018
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length210
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10774 contig Csv1_Contig10774:583..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.799e-26
Identity = 56/69 (81.16%), Postives = 62/69 (89.86%), Query Frame = -1
Query:    1 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 207
            RA+RIGTNHGSLSDRIM+ YGD+P GMVESA+EFARICRK D+HNFLFSMKASNP VM+QAYRLL   M
Sbjct:  162 RAMRIGTNHGSLSDRIMNRYGDTPFGMVESALEFARICRKNDYHNFLFSMKASNPQVMIQAYRLLTQAM 230          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.491e-22
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            GRA+RIG+NHGSLSDRI++ +GD+P GMVESA+EFA+I R LD+H+ +FSMKASN  VMV AYRLLV  M
Sbjct:  159 GRAMRIGSNHGSLSDRILNRFGDTPEGMVESAIEFAQIARDLDYHSLVFSMKASNVKVMVAAYRLLVERM 228          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.712e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = -1
Query:    7 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 210
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA+EF RI   L++++ + SMKASNP VMVQAYR+L +
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASNPQVMVQAYRMLAS 226          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.712e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = -1
Query:    7 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 210
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA+EF RI   L++++ + SMKASNP VMVQAYR+L +
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLNYYDIVVSMKASNPQVMVQAYRMLAS 226          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = -1
Query:    7 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 210
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA+EF RI   L +++ + SMKASNP VMVQAYR+L +
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASNPQVMVQAYRMLAS 226          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = -1
Query:    7 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 210
            G ++RIGTNHGSLSDRIM+ YGD+P+GMVESA+EF RI   L +++ + SMKASNP VMVQAYR+L +
Sbjct:  159 GVSMRIGTNHGSLSDRIMNRYGDTPQGMVESALEFIRIAESLGYYDIIVSMKASNPQVMVQAYRMLAS 226          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.953e-19
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            G+A+RIG NHGSL++R++  YGD+P GMVESA+EF RIC+ LDFHN + SMKAS   VM+ AYRL+   M
Sbjct:  168 GKAMRIGVNHGSLAERMLFTYGDTPEGMVESALEFIRICQSLDFHNLIISMKASRVPVMLAAYRLMAKRM 237          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlorobium tepidum GN=ispG PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.953e-19
Identity = 46/68 (67.65%), Postives = 58/68 (85.29%), Query Frame = -1
Query:    7 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 210
            G ++RIGTNHGSLSDRI+S YG+SP GMVE+A+EF+RIC    +++ LFSMK+SN  VM+QAYRLLVA
Sbjct:  220 GVSMRIGTNHGSLSDRIVSRYGNSPEGMVEAALEFSRICEDEGYYDQLFSMKSSNVRVMIQAYRLLVA 287          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.351e-19
Identity = 43/69 (62.32%), Postives = 54/69 (78.26%), Query Frame = -1
Query:    1 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 207
            +A+RIG NHGSL++R++  YGD+P GMVESA+EF RIC  LDFHN + SMKAS P VM+ AYRL+   M
Sbjct:  172 KALRIGVNHGSLAERMLFQYGDTPLGMVESAMEFVRICDSLDFHNIVISMKASRPPVMLAAYRLMADAM 240          
BLAST of FC922018 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.351e-19
Identity = 43/70 (61.43%), Postives = 54/70 (77.14%), Query Frame = -1
Query:    1 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAVEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 210
            GRA+RIG NHGSLS+RIM  YGD+  GMV SA+E+A +C  +D+HN +FSMK+SNP  MV AYR L  E+
Sbjct:  157 GRAMRIGVNHGSLSERIMQRYGDTIEGMVFSALEYAEVCVNMDYHNIVFSMKSSNPRTMVAAYRALAREL 226          
The following BLAST results are available for this feature:
BLAST of FC922018 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_PARUW4.799e-2681.164-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM85.491e-2270.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL6.712e-2066.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ6.712e-2066.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN8.766e-2066.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC8.766e-2066.184-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP21.953e-1961.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTE1.953e-1967.654-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMA4.351e-1962.324-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU4.351e-1961.434-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionC06056F05T7 RindPdigS Citrus sinensis cDNA clone C06056F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922018 ID=FC922018; Name=FC922018; organism=Citrus sinensis; type=EST; length=210bp
CATTTCAGCTACAAGCAGACGGTATGCTTGGACCATTACGACTGGGTTGC
TTGCTTTCATTGAAAAGAGAAAATTATGGAAGTCCAATTTCCGGCAGATT
CTTGCAAACTCAACGGCAGATTCAACCATTCCCCTAGGAGAATCCCCATA
GTAGCTCATGATACGATCTGAAAGGCTCCCATGGTTAGTCCCAATACGCA
CTGCCCTTCC
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