FC922011

Overview
NameFC922011
Unique NameFC922011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922011 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.612e-27
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 3
Query:    9 DHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTY 236
            + KFGK VFP NFQ G+LIGG  LD+ IPLS+QEDLIVWMRTAALPTFRKLYGKI+ DL+  D I V+L+NNYNTY
Sbjct:  210 ESKFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTY 285          
BLAST of FC922011 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.125e-27
Identity = 57/76 (75.00%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    9 DHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTY 236
            +HKFGK VFP NFQ G L GGA LD + PLS QEDLIVWMRTAALPTFRKLYGKIE DLE+ + I V L+NNYNTY
Sbjct:  208 EHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNTY 283          
BLAST of FC922011 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.045e-26
Identity = 57/76 (75.00%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    9 DHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTY 236
            +HKFG +VFP NFQ G + GGA LD  IPLS+QEDLIVWMRTAALPTFRKLYGKIE DLE  D I V L NNYNTY
Sbjct:  207 EHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNTY 282          
BLAST of FC922011 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.970e-25
Identity = 55/76 (72.37%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    9 DHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTY 236
            ++KFGK VFP NFQ G  IGG  L+ S PLS+QEDLIVWMRTAALPTFRKLYGKIE DL   D I V+L+NNYNTY
Sbjct:  207 ENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTY 282          
BLAST of FC922011 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.970e-25
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 3
Query:    9 DHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTY 236
            +HKFGK V+P NFQNGTLIGGA LD  IPLS QED IVWMR AAL +FRKLYG+IE DLE   +++V L NNYNTY
Sbjct:  204 EHKFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYNTY 279          
The following BLAST results are available for this feature:
BLAST of FC922011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ALIS4_ARATH1.612e-2773.68Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS1_ARATH6.125e-2775.00ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS3_ARATH1.045e-2675.00ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS5_ARATH1.970e-2572.37ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS2_ARATH1.970e-2571.05Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC06056E09T7 RindPdigS Citrus sinensis cDNA clone C06056E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922011 ID=FC922011; Name=FC922011; organism=Citrus sinensis; type=EST; length=475bp
CTCGGGGGGATCACAAGTTTGGCAAAGAAGTTTTCCCTAGTAACTTCCAA
AATGGGACTCTGATAGGTGGTGCACATCTTGATGAATCCATACCATTGAG
TAAGCAAGAGGACCTTATAGTTTGGATGCGGACAGCAGCTTTGCCCACTT
TTAGGAAGCTGTATGGGAAAATAGAGGTGGATCTTGAAGAGAATGATATT
ATCGATGTGATATTGGAAAACAACTACAACACGTACCTCGGCCGCGACCA
CGCTTCGAGCGGCCGCCCGGGCAGGTACATAAAAGCATTGGGTTTTTTTC
AGACCCAATGTGGTCGATCAACTTTCCAGTTACGACTACGGTTTATCGCT
AGAAAAGTCATTACCTTAGCTACTACTCACCGAGATAAAAATTATCATCT
TAAAGCGGTTATACCTTTGGTTATAAGGGATTTTTTCCCTTACTTTAAGG
TAGCCAATTTATCTTTTACTCACCT
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