FC921994

Overview
NameFC921994
Unique NameFC921994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length232
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5170 contig Csv1_Contig5170:1241..1472. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.582e-30
Identity = 57/74 (77.03%), Postives = 67/74 (90.54%), Query Frame = 3
Query:    9 ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 230
            ARSHS++ +EQG  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  334 ARSHSEIQNEQGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.291e-30
Identity = 62/74 (83.78%), Postives = 66/74 (89.19%), Query Frame = 3
Query:    9 ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 230
            ARSHS+VHDE GN IGEITSGGFSP LKKNIAMGYVKSG HK GTKVKI VRGK Y+G+ITKMPFV TKYYKP+
Sbjct:  335 ARSHSEVHDESGNKIGEITSGGFSPNLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT 408          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.624e-29
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 3
Query:   12 RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 230
            RSHS++ DE GN IGE+TSGGFSPCLKKNIA+GYVKSGLHKAGTKVKI +RGK  +G +TKMPFVPTKYYKPS
Sbjct:  336 RSHSEIQDEGGNNIGEVTSGGFSPCLKKNIAIGYVKSGLHKAGTKVKIIIRGKQNEGVVTKMPFVPTKYYKPS 408          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.624e-29
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3
Query:    9 ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 230
            ARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  334 ARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.624e-29
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 3
Query:    9 ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 230
            ARSHS++ +E+G  IGE+TSGGFSPCLKKNI MGYVKSGLHK GTK+KI +RGK Y+G++TKMPFVPTKYYKP+
Sbjct:  334 ARSHSEIQNEKGENIGEVTSGGFSPCLKKNIGMGYVKSGLHKPGTKLKIVIRGKTYEGSVTKMPFVPTKYYKPA 407          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.053e-28
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3
Query:   12 RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP 227
            RSHS++ D  G  IGEITSGGFSPCLKKNIAMGYVK+G HKAGT VKI +RGK+YDG +TKMPFVPTKYYKP
Sbjct:  335 RSHSEIQDSNGQNIGEITSGGFSPCLKKNIAMGYVKTGNHKAGTNVKIVIRGKSYDGVVTKMPFVPTKYYKP 406          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.912e-28
Identity = 57/72 (79.17%), Postives = 63/72 (87.50%), Query Frame = 3
Query:    9 ARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 224
            AR HS++ +E+G  IGEITSGGFSPCLKKNIAMGYVKSG HKAGTKV I VRGK Y+G +TKMPFVPTKYYK
Sbjct:  335 ARGHSEIQNEKGESIGEITSGGFSPCLKKNIAMGYVKSGNHKAGTKVNILVRGKPYEGVVTKMPFVPTKYYK 406          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.131e-13
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 3
Query:   12 RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 221
            R+HS + + +G  IG +TSG  SPCLKKN+AMGYV S   + GT + +EVR K     ++KMPFV T YY
Sbjct:  331 RAHSPILNMEGTVIGTVTSGCPSPCLKKNVAMGYVPSEYSRPGTPLLVEVRRKQQMAVVSKMPFVTTNYY 400          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.748e-13
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 3
Query:   18 HSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYK 224
            H    +  G  +G++TSG  SP L KNIAMGY+ +GLH+ GT   I+VR K +   + +MPFV T YYK
Sbjct:  319 HGSAVEVDGVEVGQVTSGCPSPTLGKNIAMGYISTGLHQVGTPAHIKVRNKLHPAQVVRMPFVETHYYK 387          
BLAST of FC921994 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.058e-12
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 3
Query:   12 RSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY 221
            R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT + +EVR K     ++KMPFVPT YY
Sbjct:  331 RAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMAVVSKMPFVPTNYY 400          
The following BLAST results are available for this feature:
BLAST of FC921994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GCST_FLATR5.582e-3077.03Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_ARATH7.291e-3083.78Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_PEA1.624e-2980.82Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_FLAPR1.624e-2975.68Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN1.624e-2975.68Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_SOLTU1.053e-2879.17Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_MESCR8.912e-2879.17Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_CANFA2.131e-1351.43Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_SCHPO4.748e-1347.83Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_HUMAN1.058e-1250.00Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]

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Properties
Property NameValue
Genbank descriptionC06056D02T7 RindPdigS Citrus sinensis cDNA clone C06056D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921994 ID=FC921994; Name=FC921994; organism=Citrus sinensis; type=EST; length=232bp
CGCGGGCTGCCAGATCACACAGTAAGGTTCACGATGAGCAAGGCAATCCC
ATTGGAGAAATTACCAGTGGAGGATTCAGCCCCTGCCTCAAGAAGAATAT
AGCCATGGGATATGTAAAATCTGGATTGCACAAGGCAGGCACAAAAGTTA
AGATTGAGGTTCGAGGAAAAGCCTACGATGGAAACATCACTAAAATGCCA
TTTGTGCCAACAAAATACTACAAGCCGTCTTA
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