FC921991

Overview
NameFC921991
Unique NameFC921991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921991_ssr30 microsatellite FC921991_ssr30:30..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13670 contig Csv1_Contig13670:3..310. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.494e-31
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = -1
Query:   63 MEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGTKQEADRVHLKSFWG 308
            +E+FLS RCEF I+GQEFT+ GWGFAFPR+SPLAVD+S AIL+LSENGD+QRI DKWL R ACS QG + E DR+ LKSFWG
Sbjct:  740 IELFLSNRCEFGIVGQEFTKNGWGFAFPRNSPLAVDVSAAILQLSENGDMQRIRDKWLLRKACSLQGAEIEVDRLELKSFWG 821          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.108e-30
Identity = 56/82 (68.29%), Postives = 72/82 (87.80%), Query Frame = -1
Query:   63 MEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGTKQEADRVHLKSFWG 308
            +E+FLS+ C + I+GQEFT+ GWGFAFPRDSPLA+D+S AILEL+ENGDLQRIHDKWL ++AC+ +  + E+DR+HLKSFWG
Sbjct:  750 VELFLSSNCAYRIVGQEFTKSGWGFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLMKNACTLENAELESDRLHLKSFWG 831          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 6.954e-25
Identity = 53/84 (63.10%), Postives = 67/84 (79.76%), Query Frame = -1
Query:   63 MEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGTKQEAD--RVHLKSFWG 308
            +++FLS  C+F+I GQEFTR GWGFAFPRDSPLAVDMS AIL LSE G+LQ+IHD+WL++S CSS    Q  D  ++++ SFWG
Sbjct:  747 IDLFLSDYCKFAIRGQEFTRCGWGFAFPRDSPLAVDMSTAILGLSETGELQKIHDRWLSKSNCSSPHGSQSGDSEQLNVHSFWG 830          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.549e-24
Identity = 52/85 (61.18%), Postives = 68/85 (80.00%), Query Frame = -1
Query:   63 MEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQG---TKQEADRVHLKSFWG 308
            +++FLS  C F+I GQEFTR GWGFAFPRDSPLA+DMS AIL LSE G LQ+IHDKWL+RS CS+     + ++++++ L+SFWG
Sbjct:  747 VDLFLSEFCGFAIRGQEFTRSGWGFAFPRDSPLAIDMSTAILGLSETGQLQKIHDKWLSRSNCSNLNGSVSDEDSEQLKLRSFWG 831          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.399e-22
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = -1
Query:   63 MEVFLS-TRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLT-RSACSSQGTKQEADRVHLKSFWG 308
            +EV L+ + C+F  +GQEFTR GWGFAF RDSPLAVDMS AIL+LSE G+L++IH KWL  +  CS Q +  E  ++ LKSFWG
Sbjct:  777 IEVLLTNSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLSEEGELEKIHRKWLNYKHECSMQISNSEDSQLSLKSFWG 860          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.572e-21
Identity = 50/83 (60.24%), Postives = 64/83 (77.11%), Query Frame = -1
Query:   69 MEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACS-SQGTK--QEADRVHLKSF 308
            +E+FL    +F+++G EFT+ GWGFAFPRDSPL+VD+S AILELSENGDLQRIHDKWL     S SQ ++  Q+ DR+ + SF
Sbjct:  752 IELFLYQNPKFAVVGSEFTKSGWGFAFPRDSPLSVDLSTAILELSENGDLQRIHDKWLASDMSSMSQASELDQDPDRLDVYSF 834          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.727e-19
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = -1
Query:   63 STRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRS-ACSSQGTKQEADRVHLKSFWG 293
            ++ C+F  +GQEFTR GWGFAF RDSPLAVDMS AIL+L+E G L++I  KWLT    C+ Q +  E  ++ ++SFWG
Sbjct:  776 NSNCKFRTVGQEFTRTGWGFAFQRDSPLAVDMSTAILQLAEEGKLEKIRKKWLTYDHECTMQISDTENYQISVQSFWG 853          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.834e-17
Identity = 43/83 (51.81%), Postives = 57/83 (68.67%), Query Frame = -1
Query:   63 MEVFLSTRCEFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKWLTRSACSSQGT-KQEADRVHLKSFWG 308
            +E+FL+ R  F I+G+ F   GWGFAF RDSPLA+DMS AIL+LSE   LQ I  KWL ++ C+ +     E +++HLKSF G
Sbjct:  743 IELFLAERTGFKIVGEPFMHRGWGFAFKRDSPLAIDMSTAILKLSETRKLQEIRKKWLCKTNCAGKSNWNPEPNQLHLKSFKG 825          
BLAST of FC921991 vs. ExPASy Swiss-Prot
Match: GLR28_ARATH (Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.749e-11
Identity = 32/84 (38.10%), Postives = 53/84 (63.10%), Query Frame = -1
Query:   63 MEVFLSTRC-EFSIIGQEFTRIGWGFAFPRDSPLAVDMSIAILELSENGDLQRIHDKW-LTRSACSSQGTKQEADRVHLKSFWG 308
            +   LS  C +++I+   F   G+GFAFPR+SPL  D+S AIL +++  ++Q I +KW + ++ C    T   ++R+ L+SFWG
Sbjct:  736 LRAILSQYCSKYAIVEPTFKTAGFGFAFPRNSPLTGDVSKAILNVTQGDEMQHIENKWFMKQNDCPDPKTALSSNRLSLRSFWG 819          
The following BLAST results are available for this feature:
BLAST of FC921991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
GLR36_ARATH6.494e-3173.17Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR33_ARATH1.108e-3068.29Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH6.954e-2563.10Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH1.549e-2461.18Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR34_ARATH9.399e-2259.52Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ3.572e-2160.24Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR35_ARATH9.727e-1955.13Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR37_ARATH1.834e-1751.81Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR28_ARATH9.749e-1138.10Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionC06056C09T7 RindPdigS Citrus sinensis cDNA clone C06056C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921991 ID=FC921991; Name=FC921991; organism=Citrus sinensis; type=EST; length=308bp
ACAATCTGTACGAGATATATTAAGAGAGAAAGCAAGCAAGCTAAACCACA
CAAAACAAAGAGGCCCCAAAAGCTTTTAAGATGAACCCGGTCTGCTTCTT
GCTTTGTGCCTTGTGAACTGCAAGCGCTTCTTGTGAGCCACTTGTCATGA
ATTCTTTGCAGATCTCCATTCTCTGATAGTTCCAGGATGGCAATTGACAT
GTCAACTGCAAGAGGTGAGTCCCTTGGAAATGCAAATCCCCACCCAATTC
TGGTAAATTCTTGGCCTATGATGCTGAATTCACAACGTGTAGAGAGGAAG
ACCTCCAT
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