CX047717

Overview
NameCX047717
Unique NameCX047717
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.203e-76
Identity = 143/149 (95.97%), Postives = 146/149 (97.99%), Query Frame = -3
Query:  358 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 804
            DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSI RDIKQRL+DTDSRAEP TIKI+Q D
Sbjct:   51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGRDIKQRLSDTDSRAEPATIKISQTD 199          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.797e-72
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = -3
Query:  382 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 804
            DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPT+KGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD+D+R E Q
Sbjct:   51 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADSDTRQEAQ 191          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.206e-57
Identity = 108/144 (75.00%), Postives = 128/144 (88.89%), Query Frame = -3
Query:  373 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 804
            DFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF NIRNWIRNIEQHA+D+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F S+A+DIK+R+ DT +  +PQ ++
Sbjct:   51 DFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAE-KKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTPNE-QPQVVQ 192          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.529e-55
Identity = 105/134 (78.36%), Postives = 121/134 (90.30%), Query Frame = -3
Query:  403 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 804
            DFKIRTIEL+GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE SF +IRNWIRNIEQHASD+VNK+L+GNK DM E K+ V +S+G++LADEYGIKF ETSAK ++NVEE F  +A+DIK+R+ DT
Sbjct:   51 DFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTE-KKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDIKKRMIDT 183          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.602e-52
Identity = 92/131 (70.23%), Postives = 116/131 (88.55%), Query Frame = -3
Query:  412 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 804
            DFKI+ +++DGK +KLQIWDTAGQERFRTIT+AYYRGA GI+LVYD+TDE+SFNN+RNW+RNIEQHASDNVNKILVGNK D+ E KR V  ++GQALADE+G +F+ETSAK N++VEE F ++A+D+  R+
Sbjct:   49 DFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDVLARM 179          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.284e-51
Identity = 98/146 (67.12%), Postives = 119/146 (81.51%), Query Frame = -3
Query:  367 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 804
            DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILL+YDVTD+ SF+N+R W  N+EQHAS+NV KIL+GNK D  E +R V   +GQALADE G+KF E SAKTN+NV+E FF++AR+IK++  D ++    Q   ++
Sbjct:   45 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.525e-50
Identity = 101/153 (66.01%), Postives = 123/153 (80.39%), Query Frame = -3
Query:  358 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 804
            DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.525e-50
Identity = 101/153 (66.01%), Postives = 123/153 (80.39%), Query Frame = -3
Query:  358 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 804
            DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.525e-50
Identity = 101/153 (66.01%), Postives = 123/153 (80.39%), Query Frame = -3
Query:  358 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 804
            DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of CX047717 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 3.298e-50
Identity = 95/131 (72.52%), Postives = 115/131 (87.79%), Query Frame = -3
Query:  412 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 804
            DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct:   44 DFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
The following BLAST results are available for this feature:
BLAST of CX047717 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA3_ARATH1.203e-7695.97Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RB1BV_BETVU1.797e-7296.45Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB8A_DICDI6.206e-5775.00Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB8B_DICDI1.529e-5578.36Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
YPTV2_VOLCA4.602e-5270.23GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
YPT2_SCHPO2.284e-5167.12GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB8A_MACFA2.525e-5066.01Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN2.525e-5066.01Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA2.525e-5066.01Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_RAT3.298e-5072.52Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_16B01_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-16B01-C1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047717 ID=CX047717; Name=CX047717; organism=Citrus sinensis; type=EST; length=845bp
TTTTTTTTTTTTTTTTTGTATCAGAGAAAAGAAGGCTGCTTCTATTTAAT
TCTCAGTATCGAAAAAGCAAAATAACAGGCATTACATGGTTTTTCAGCAC
AAGGAACAAAAGAAATGAAAGAAACTAATATAATATAATTAATGCCAAAC
ACAGATGATCTATCATTCACAAGCAAGCGTGTGGTAGTTGTAAAATAATG
ATAGAACAATACAAGCACCAATGATATAGTTGACAAAATTAGTTGTCCCA
ACCAAAATGATTGCCTTGACATATACCCATGTGATCTCACCCGCATAGAT
TGCTTAAGAACCGCAGCAAGCTGATCTTTGGGCAGCTTGAGCAGCCCCAC
CTGCCTGGTCAGGTTGGTTAATTTTGATAGTCTGAGGCTCAGCCCTAGAG
TCTGTATCTGCAAGCCTTTGCTTGATGTCCCTTGCAATTGAAAAGAAAAC
CTCCTCCACATTTAGGTTTGTCTTTGCACTAGTCTCAAAGAACTTGATGC
CATATTCATCAGCAAGAGCTTGGCCCTTTGAAGTGGGGACAGCCCTTTTG
CTTTCGTCCATGTCGGCCTTGTTACCCACCAGAATCTTGTTTACATTGTC
AGATGCATGCTGTTCGATATTACGGATCCAATTCCTAATGTTGTTGAAAG
ATGACTCGTCGGTGACATCATATACGAGCAATATTCCCATGGCTCCTCGG
TAGTATGCGGTTGTAATTGTTCGAAACCTCTCTTGACCTGCAGTATCCCA
TATTTGAAGTTTAATTCGTTTTCCATCAAGCTCTATGGTCCTAATCTTGA
AGTCAATACCAATGGTTGTAATAAAACTGGTAGTAAAGGAACCAT
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