CX047371

Overview
NameCX047371
Unique NameCX047371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX047371_ssr134 microsatellite CX047371_ssr134:134..147. BLAST: Citrus ESTs to Prunus persica proteins V1
CX047371_ssr150 microsatellite CX047371_ssr150:150..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX047371 vs. ExPASy Swiss-Prot
Match: SBP65_PEA (Seed biotin-containing protein SBP65 OS=Pisum sativum GN=SBP65 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.197e-21
Identity = 76/215 (35.35%), Postives = 98/215 (45.58%), Query Frame = -2 
Query:  280 KAVVAGWSTAHYTTEKSVGGTAAVAKAAQYTTGKVVEGTMAAVRAVEGAAEYAGHKAAEIVSKPLVAAKDAAVSTGETMKEYTARKKEEAQREVEAKR-----------------------GER---QGTE-RSHTGGEERSLTTEVHEKVEHVSMPIXXXXXXXXXXXXXXXXEYREDKGRE-GGVLQAIGETVVEIAQQTKDLVIGEGETEEK 840
            KA VAGW+ +HY T+ +V                  +GT AA  AVEGA  Y   KA+E+ +K +   K  A S GET KE+TARKKEE+ RE EAKR                       GER   QGT  +    G+   +   V E V  +   +                     KG++ GGVL AIGET+ EIA  TK +V+GE +  EK
Sbjct:  326 KATVAGWTASHYATQLTV------------------DGTRAAANAVEGAVGYVAPKASELAAKSVETVKGLAASAGETAKEFTARKKEESWREYEAKRASQLQEGEEILPSTGGIGKVLPSGERTQAQGTNLQEKVQGKGSDILGAVTETVSDIGSSMIKPIDNANTKVKEHGGTTITPKGQDAGGVLDAIGETIAEIAHTTKVIVVGEDDEVEK 522
[Close]
BLAST of CX047371 vs. ExPASy Swiss-Prot
Match: SBP65_SOYBN (Seed biotin-containing protein SBP65 OS=Glycine max GN=SBP65 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.940e-18
Identity = 51/98 (52.04%), Postives = 59/98 (60.20%), Query Frame = -2 
Query:  547 KAVVAGWSTAHYTTEKSVGGTAAVAKAAQYTTGKVVEGTMAAVRAVEGAAEYAGHKAAEIVSKPLVAAKDAAVSTGETMKEYTARKKEEAQREVEAKR 840
            KA   GW+ AH++ EK+V                  EGT AA   VEGAA YAGHKAAE+ S    A K  A S GET KEYTA+KKEEAQRE+EAK+
Sbjct:  363 KATAVGWAAAHFSAEKTV------------------EGTKAAAHVVEGAAGYAGHKAAELASMSAGAVKGLAASAGETAKEYTAKKKEEAQRELEAKK 442
The following BLAST results are available for this feature:
BLAST of CX047371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SBP65_PEA3.197e-2135.35Seed biotin-containing protein SBP65 OS=Pisum sati... [more]
SBP65_SOYBN1.940e-1852.04Seed biotin-containing protein SBP65 OS=Glycine ma... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_13G04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13G04-M8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047371 ID=CX047371; Name=CX047371; organism=Citrus sinensis; type=EST; length=841bp
TTTTTTTTTTTTTTTTTACAACAACAGGACGCTAACCGAGCGTTAGGGGT
TTCAATTTATTTGTCAAAACAAAAATACAGACAACCAGCCTATGCAAAAC
ATTTATCATCCGCTTATGCACATCAAACATAACATATATATATATATAGA
TATATATATATGTATGAAATGAGCGCTTTATTCATTTTCGGTAGATTTGT
GTGTCCCATTTCCCTGTCCATATCCAGCCTCTCTTTGTTTACTGCCTTCT
TCAACTTGGCTTGAGCGGTAACCAAGTATCTTCTCCTCTGTTTCGCCTTC
TCCAATGACAAGGTCTTTGGTTTGCTGGGCAATTTCAACTACAGTTTCGC
CGATGGCCTGAAGCACTCCTCCTTCCCGGCCTTTATCTTCTCTGTATTCG
GTGGTTCTTCCTCCTTGTCGTTCTTGGCCTCCTTGGAATGTTTCCTGGAT
TGGCATGGAGACATGTTCAACTTTCTCGTGGACTTCTGTTGTGAGTGACC
GTTCTTCCCCTCCGGTGTGACTCCTCTCCGTGCCCTGTCTTTCACCTCTC
TTGGCCTCTACCTCTCTCTGTGCCTCTTCCTTCTTCCTAGCAGTATATTC
CTTCATGGTCTCACCAGTAGACACTGCAGCATCCTTAGCAGCAACCAACG
GCTTCGAGACAATCTCCGCGGCCTTATGACCAGCATACTCAGCCGCTCCT
TCAACCGCCCTCACCGCTGCCATTGTCCCCTCAACCACTTTCCCTGTGGT
ATATTGTGCCGCCTTGGCGACAGCAGCCGTGCCTCCCACAGATTTCTCAG
TTGTATAGTGCGCCGTGCTCCATCCCGCAACCACGGCCTTG
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