CX047333

Overview
NameCX047333
Unique NameCX047333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3382 contig Csv1_Contig3382:947..1833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP3 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae (strain 342) GN=arnA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.051e-12
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  558 IKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 887
            I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  540 ISDGIEALFRIIENKDGRCDGQIINIGNPENEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.597e-12
Identity = 39/113 (34.51%), Postives = 62/113 (54.87%), Query Frame = -2
Query:  558 IKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 887
            I D IEA+  +IEN   R +G I N+GNP NE ++++LAEM+   + +  +           +V S ++YG+GY D + R P +    + L W PK  + + +E TL +  RT
Sbjct:  540 ISDGIEALFRIIENKDGRCDGQIINIGNPDNEASIKELAEMLLACFERHPLRDRFPPFAGFREVESSDYYGKGYQDVEHRKPSIRNAKRCLNWEPKVEMEETVEHTLDFFLRT 652          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 40/113 (35.40%), Postives = 58/113 (51.33%), Query Frame = -2
Query:  558 IKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 887
            I D IEA+  +IEN     +G I N+GNP NE ++R+LAEM+ E +    +           DV S  +YG+GY D + R P +    + L W P  ++   +  TL Y  RT
Sbjct:  540 INDGIEALFRIIENRDGLCDGQIVNIGNPTNEASIRELAEMLLESFNNHPLRDRFPPFAGFKDVESSSYYGKGYQDVEHRTPSIKNARRLLDWQPTIAMQQTVADTLDYFLRT 652          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.276e-11
Identity = 39/113 (34.51%), Postives = 57/113 (50.44%), Query Frame = -2
Query:  558 IKDAIEAVLLMIENP-ARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 887
            I D IEA+  +IEN   + +G I N+GNPHNE ++R+L EM+   +    +          +DV S  +YG+GY D   R P +    + L W P   +   +  TL Y  RT
Sbjct:  547 IHDGIEALFRVIENRNGQCDGQIINIGNPHNEASIRELGEMLLTSFNAHPLRDRFPPFAGFIDVESSSYYGKGYQDVAHRTPSIRNAKRLLEWEPTVKMEQTVAETLDYFLRT 659          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 38/109 (34.86%), Postives = 56/109 (51.38%), Query Frame = -2
Query:  570 IKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 887
            + D IEA+  +IEN   R NG I N+GNP NE ++RQL E +   +    + G         +V S+ FYG+GY D   R P +    + +GW P   L + +  TL +
Sbjct:  543 VVDGIEALARIIENRDGRCNGQIINIGNPDNEASIRQLGEELLRQFEAHPLRGHFPPFAGFREVESQSFYGKGYQDVSHRTPSIDNAKKLIGWTPGIELSETIGKTLDF 651          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_ERWT9 (Bifunctional polymyxin resistance protein arnA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = -2
Query:  570 IKDAIEAVLLMIENPAR-ANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 887
            I D IEA+ L+IEN  +  +G I N+GNP NE +++QLAE + E + +  +           +V S  +YG+GY D + R P +    Q L W P  ++   ++ TL +
Sbjct:  540 IHDGIEALFLIIENKQKNCDGQIINIGNPENEASIKQLAEQLLESFERHPLRDRFPPFAGFREVESSTYYGKGYQDVEHRKPSIRNAKQLLNWQPTIAMDKTIDDTLDF 648          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_WIGBR (Bifunctional polymyxin resistance protein arnA OS=Wigglesworthia glossinidia brevipalpis GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = -2
Query:  570 IKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEV---------YAKVSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTY 887
            I D IEA+  +I+N   + N  I N+GNPHNE T+ QL +++  +         + K SG   L       S   +YGEGY D D+R P++ I  + L W PKT +   L   + +
Sbjct:  539 IDDGIEALFEIIKNKNNKCNKKIINIGNPHNEYTIMQLTKIIINIIYSNNRNYNFPKFSGFNML-------SGTNYYGEGYQDIDRRKPNIDIAKKLLNWTPKTKIRITLRKIINF 647          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_PROMH (Bifunctional polymyxin resistance protein arnA OS=Proteus mirabilis (strain HI4320) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 39/118 (33.05%), Postives = 60/118 (50.85%), Query Frame = -2
Query:  543 IKDAIEAVLLMIEN-PARANGHIFNVGNPHNEVTVRQLAEMMTEVYAK--VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAI 887
            I D IEA+  +IEN   + +G I N+GNP NE ++R+LAEM+ + + K  + G          + S  +YG+GY D + R P +    + L W P       +E TL +  R   E +
Sbjct:  540 INDGIEALFRIIENRDNKCDGQIINIGNPTNEASIRELAEMLLDCFEKHELRGHFPPFAGFKKIESSSYYGKGYQDVEHRKPSIKNAERLLDWKPTIETRQTVEETLDFFLRGAVEEL 657          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_ECO7I (Bifunctional polymyxin resistance protein arnA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=arnA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.294e-11
Identity = 41/128 (32.03%), Postives = 64/128 (50.00%), Query Frame = -2
Query:  534 IKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRTYAEAIKQA 887
            I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +    + L W PK  + + ++ TL +  RT     KQ+
Sbjct:  540 IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHYFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNARRCLDWEPKIDMQETIDETLDFFLRTVDLTDKQS 660          
BLAST of CX047333 vs. ExPASy Swiss-Prot
Match: ARNA_SHIDS (Bifunctional polymyxin resistance protein arnA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=arnA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.526e-11
Identity = 39/120 (32.50%), Postives = 62/120 (51.67%), Query Frame = -2
Query:  558 IKDAIEAVLLMIENPA-RANGHIFNVGNPHNEVTVRQLAEMMTEVYAK---------VSGEAALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINQQLGWNPKTSLWDLLESTLTYQHRT 887
            I+D IEA+  +IEN   R +G I N+GNP NE ++ +L EM+   + K          +G   +E       S  +YG+GY D + R P +   ++ L W PK  + + ++ TL +  RT
Sbjct:  540 IRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVE-------SSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRT 652          
The following BLAST results are available for this feature:
BLAST of CX047333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ARNA_KLEP35.051e-1234.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP76.597e-1234.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP54.276e-1135.40Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT4.276e-1134.51Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEU25.585e-1134.86Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWT95.585e-1133.94Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_WIGBR7.294e-1134.48Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PROMH7.294e-1133.05Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ECO7I7.294e-1132.03Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SHIDS9.526e-1132.50Bifunctional polymyxin resistance protein arnA OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_13E07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-13E07-I14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047333 ID=CX047333; Name=CX047333; organism=Citrus sinensis; type=EST; length=888bp
TTTTACCGGTTGAAGAATTTTATATGCTCTTAAGAGTTGATAATTTCAGA
ATAAACAACAAATCTTACATGCATAGAATTAATAAATAATCAAAAATAAA
ACATGAGCCTGAGAGGATCAAACAAATTAATACAACACACCCCAGGAGAG
AGACCAAAGATTTAGAGAAAAGCCAGGCCAACCGCCAAGCGAATCAAAAA
CACCTTTTCCTTGTATACTGCCCCCACCCCAGCATGCGGGTAGCCCAAGC
TCTGGCAACAAATTACAGTAACATGATGGTAACTGATTTTATAGTTCCCT
AGTAGAATCTAACGCTTCTCAAAGTAGATATCCAAAACACTGAAGAGAGC
TTCCTGAGCTACAGCGAGCTATATATTGACTACCAACACTGGAGGAGAGA
AAAAAAAAAATGTAGAGTATATTCGAAACAACCGTTCAGATATATTCAAG
ACTAACTCGAAAAAGAATTTAAATGTTTGCCACAAGCATCCGAACACTAT
ATCTCCTCAGCTGGATGCAACTGGTTTTGCCACGGCCTGCTTTATGGCCT
CCGCATATGTCCTGTGCTGATAGGTAAGGGTTGATTCAAGCAAGTCCCAA
AGTGATGTCTTCGGGTTCCAACCAAGCTGTTGATTTATAATGGTCATGTC
TGGAATTCTCTTGTCACTATCATCATATCCTTCACCATAAAATTCTTTGG
AGCTGACATCAACTGTTGGCTCCTCCAAAGCAGCCTCTCCACTCACCTTT
GCATACACCTCAGTCATCATCTCAGCAAGCTGTCGAACTGTAACTTCATT
GTGGGGGTTGCCCACATTGAAAATATGACCATTGGCCCTTGCTGGATTTT
CAATCATTAATAGAACAGCTTCAATAGCATCCTTTATG
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