CX046964

Overview
NameCX046964
Unique NameCX046964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:1481..2189. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CITSI (50S ribosomal protein L14, chloroplastic OS=Citrus sinensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.975e-48
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CARPA (50S ribosomal protein L14, chloroplastic OS=Carica papaya GN=rpl14 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.849e-46
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKEL+R+NGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELKRNNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_PLAOC (50S ribosomal protein L14, chloroplastic OS=Platanus occidentalis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_CALFG (50S ribosomal protein L14, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.721e-46
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEVIRAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_TOBAC (50S ribosomal protein L14, chloroplastic OS=Nicotiana tabacum GN=rpl14 PE=3 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.859e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_SOLTU (50S ribosomal protein L14, chloroplastic OS=Solanum tuberosum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.859e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_SOLLC (50S ribosomal protein L14, chloroplastic OS=Solanum lycopersicum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.859e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_SOLBU (50S ribosomal protein L14, chloroplastic OS=Solanum bulbocastanum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.859e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_NICSY (50S ribosomal protein L14, chloroplastic OS=Nicotiana sylvestris GN=rpl14 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.859e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
[Close]
BLAST of CX046964 vs. ExPASy Swiss-Prot
Match: RK14_COFAR (50S ribosomal protein L14, chloroplastic OS=Coffea arabica GN=rpl14 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.859e-46
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = -1 
Query:    2 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIVRTCKELRRDNGMIIRYDDNAAVVIDHEGNPKG 286
            MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPN PLERSEV+RAVIVRTCKEL+RDNGMIIRYDDNAAVVID EGNPKG
Sbjct:    1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEVVRAVIVRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKG 95
The following BLAST results are available for this feature:
BLAST of CX046964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK14_CITSI3.975e-48100.0050S ribosomal protein L14, chloroplastic OS=Citrus... [more]
RK14_CARPA2.849e-4696.8450S ribosomal protein L14, chloroplastic OS=Carica... [more]
RK14_PLAOC3.721e-4696.8450S ribosomal protein L14, chloroplastic OS=Platan... [more]
RK14_CALFG3.721e-4696.8450S ribosomal protein L14, chloroplastic OS=Calyca... [more]
RK14_TOBAC4.859e-4695.7950S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_SOLTU4.859e-4695.7950S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_SOLLC4.859e-4695.7950S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_SOLBU4.859e-4695.7950S ribosomal protein L14, chloroplastic OS=Solanu... [more]
RK14_NICSY4.859e-4695.7950S ribosomal protein L14, chloroplastic OS=Nicoti... [more]
RK14_COFAR4.859e-4695.7950S ribosomal protein L14, chloroplastic OS=Coffea... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C08_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C08-F16-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046964 ID=CX046964; Name=CX046964; organism=Citrus sinensis; type=EST; length=709bp
TTCCCTTTGGATTTCCTTCGTGATCAATGACAACTGCAGCATTGTCATCG
TACCGTATTATCATACCGTTATCACGTCTGAGTTCTTTACAAGTACGTAC
AATTACAGCTCTGATCACTTCTGATCTTTCTAGAGGCGTATTGGGTACTG
CTTCCTTGATCACAGCAACAATAACGTCACCAATATGAGCATATCTACGA
TTACTGGCTCCTATGATTCGAATACACATCAATTCTCGGGCACCGCTATT
GTCTGCTACATTCAAATGGGTTTGAGGTTGAATCATATCGTTTTTTGAGT
CCGTTTTTTTAATGTTTAATTTAAAGTAAAGCACTGAAAGGACGAAGTAA
AAAAAAAAAGGGAAGACCCGCATTTTTTATACCCAAGATTTATTTCCTTT
GTTTCGACATTCCTATCCCGAAATAATGAATTGAGTTCTTATAGGCATTT
TGGACGCCGCTATTGAAATAGCCTTTCGAGCTATATTTTCAGCTACTCCA
CTCATTTCATAAAGTATTCTACCCGGTTTAACGACGGCTACCCAATATTC
GGGGGATCCTTTACCGGACCCCATACGGGTTTCCGTGGGTCTTAGTGTAA
CGGGTTTGTCTGGAAAGATACGTACCCATATTTTTCCCCCGCGCCGTACA
TTTCGTGGCATTGCCCGGCGCCCCGCTTCGATTTGTCTAGATGTGATCCA
AGCGGGTTC
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