CX046963

Overview
NameCX046963
Unique NameCX046963
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1013 contig Csv1_Contig1013:414..1230. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH1_ARATH (Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2)

HSP 1 Score: 362.459 bits (929), Expect = 1.648e-99
Identity = 176/195 (90.26%), Postives = 189/195 (96.92%), Query Frame = -3 
Query:  232 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 816
            GRTPFT+GL L+KIGVETDK GRI VN+RF +N+PGVYAIGDVIPGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYTHPEVASVGKTEEQ+K+ GV YRVGKFPF+ANSRAKAID+AEG+VKILA+KETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMAT+DKPIHI
Sbjct:  313 GRTPFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATYDKPIHI 507
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_PEA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisum sativum GN=LPD PE=1 SV=2)

HSP 1 Score: 358.221 bits (918), Expect = 3.108e-98
Identity = 174/195 (89.23%), Postives = 188/195 (96.41%), Query Frame = -3 
Query:  232 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 816
            GRTPFT+GL LDKIGVETDK+GRI VNERF+TN+ GVYAIGDVIPGPMLAHKAEEDGVACVE+LAGK GHVDYDKVPGVVYT+PEVASVGKTEEQVKE GVEYRVGKFPF+ANSRAKAID+AEG+VKI+AEKETDKILGVHIMAPNAGELIHEA +A+ YDASSEDIARVCHAHPTMSEA+KEAAMAT+DKPIHI
Sbjct:  307 GRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHI 501
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH2_ARATH (Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 7.655e-97
Identity = 172/195 (88.21%), Postives = 187/195 (95.90%), Query Frame = -3 
Query:  232 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATHDKPIHI 816
            GRTPFT+GL L+KIGVETDK GRI VNERF+TN+ GVYAIGDVIPGPMLAHKAEEDGVACVEF+AGKHGHVDYDKVPGVVYT+PEVASVGKTEEQ+K+ GV Y VGKFPF+ANSRAKAID AEG+VKILA+KETDKILGVHIM+PNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEA+KEAAMAT+DKPIH+
Sbjct:  313 GRTPFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGKFPFMANSRAKAIDTAEGMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHM 507
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_CRIGR (Dihydrolipoyl dehydrogenase, mitochondrial OS=Cricetulus griseus GN=DLD PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.977e-70
Identity = 124/195 (63.59%), Postives = 156/195 (80.00%), Query Frame = -3 
Query:  235 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAM-ATHDKPIH 816
            GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y AS EDIARVCHAHPT+SEA +EA + A+  KPI+
Sbjct:  314 GRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKPIN 508
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_PIG (Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.321e-69
Identity = 122/187 (65.24%), Postives = 151/187 (80.75%), Query Frame = -3 
Query:  256 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 816
            GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+I+EA LA+ Y AS EDIARVCHAHPT+SEA +EA +A
Sbjct:  314 GRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHIIGPGAGEMINEAALALEYGASCEDIARVCHAHPTLSEAFREANLA 500
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_MACFA (Dihydrolipoyl dehydrogenase, mitochondrial OS=Macaca fascicularis GN=DLD PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.321e-69
Identity = 121/187 (64.71%), Postives = 151/187 (80.75%), Query Frame = -3 
Query:  256 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 816
            GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y AS EDIARVCHAHPT+SEA +EA +A
Sbjct:  314 GRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLA 500
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_HUMAN (Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo sapiens GN=DLD PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 2.321e-69
Identity = 121/187 (64.71%), Postives = 151/187 (80.75%), Query Frame = -3 
Query:  256 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 816
            GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AGE+++EA LA+ Y AS EDIARVCHAHPT+SEA +EA +A
Sbjct:  314 GRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLA 500
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_MOUSE (Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus musculus GN=Dld PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 5.171e-69
Identity = 122/195 (62.56%), Postives = 154/195 (78.97%), Query Frame = -3 
Query:  235 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAM-ATHDKPIH 816
            GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+E+++GKFPF ANSRAK   D +G+VKIL  K TD++LG HI+ P AGE+++EA LA+ Y AS EDIARVCHAHPT+SEA +EA + A   KPI+
Sbjct:  314 GRRPFTQNLGLEELGIELDPKGRIPVNNRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEFKIGKFPFAANSRAKTNADTDGMVKILGHKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAAAFGKPIN 508
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_RAT (Dihydrolipoyl dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Dld PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.820e-69
Identity = 123/195 (63.08%), Postives = 155/195 (79.49%), Query Frame = -3 
Query:  235 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAM-ATHDKPIH 816
            GR PFT  LGL+++G+E D  GRIPVN RF T IP ++AIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE GVE++VGKFPF ANSRAK   D +G+VKIL  K TD+ILG HI+ P AGE+++EA LA+ Y AS ED+ARVCHAHPT+SEA +EA + A+  KPI+
Sbjct:  314 GRRPFTQNLGLEELGIELDPKGRIPVNTRFQTKIPNIFAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGVEFKVGKFPFAANSRAKTNADTDGMVKILGHKSTDRILGAHILGPGAGEMVNEAALALEYGASCEDVARVCHAHPTLSEAFREANLAASFGKPIN 508
[Close]
BLAST of CX046963 vs. ExPASy Swiss-Prot
Match: DLDH_PONAB (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pongo abelii GN=DLD PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.504e-68
Identity = 120/187 (64.17%), Postives = 150/187 (80.21%), Query Frame = -3 
Query:  256 GRTPFTAGLGLDKIGVETDKMGRIPVNERFATNIPGVYAIGDVIPGPMLAHKAEEDGVACVEFLAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQVKELGVEYRVGKFPFLANSRAKAIDDAEGIVKILAEKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMA 816
            GR PFT  LGL+++G+E D  GRIPVN RF T IP +YAIGDV+ GPMLAHKAE++G+ CVE +AG   H+DY+ VP V+YTHPEVA VGK+EEQ+KE G+EY+VGKFPF ANSRAK   D +G+VKIL +K TD++LG HI+ P AG +++EA LA+ Y AS EDIARVCHAHPT+SEA +EA +A
Sbjct:  314 GRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGGMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLA 500
The following BLAST results are available for this feature:
BLAST of CX046963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 222
Match NameE-valueIdentityDescription
DLDH1_ARATH1.648e-9990.26Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Ar... [more]
DLDH_PEA3.108e-9889.23Dihydrolipoyl dehydrogenase, mitochondrial OS=Pisu... [more]
DLDH2_ARATH7.655e-9788.21Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Ar... [more]
DLDH_CRIGR7.977e-7063.59Dihydrolipoyl dehydrogenase, mitochondrial OS=Cric... [more]
DLDH_PIG2.321e-6965.24Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus ... [more]
DLDH_MACFA2.321e-6964.71Dihydrolipoyl dehydrogenase, mitochondrial OS=Maca... [more]
DLDH_HUMAN2.321e-6964.71Dihydrolipoyl dehydrogenase, mitochondrial OS=Homo... [more]
DLDH_MOUSE5.171e-6962.56Dihydrolipoyl dehydrogenase, mitochondrial OS=Mus ... [more]
DLDH_RAT8.820e-6963.08Dihydrolipoyl dehydrogenase, mitochondrial OS=Ratt... [more]
DLDH_PONAB1.504e-6864.17Dihydrolipoyl dehydrogenase, mitochondrial OS=Pong... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C07_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C07-F14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046963 ID=CX046963; Name=CX046963; organism=Citrus sinensis; type=EST; length=818bp
TTTTTTTTTAGCTCAAGTCAATGTATCTCTCAATTATTATTTTGCGCATC
AAAACATAACAAAAGAAACCCAAGTTATTCCATCATCATATAAACATATA
AATGAGGAAAAACAAATTTCTATTAAAGCATCTGCTTCAAAGCTGGACAA
TTGAGAAAACAGAAGAACGTCTTTTTCAAGATATCTGAAAAATCTCAAAC
AAAAAATAACAAAGTAATAACCCGCTTCTCAGATGTGAATGGGTTTGTCG
TGAGTGGCCATAGCAGCCTCCTTCAATGCCTCACTCATTGTAGGATGTGC
ATGGCACACACGTGCAATGTCCTCACTTGATGCATCATAATTAATGGCCA
GGACAGCCTCGTGGATGAGCTCTCCAGCATTGGGTGCCATAATATGAACC
CCCAATATCTTGTCTGTCTCTTTCTCAGCCAAAATCTTGACTATTCCTTC
AGCATCATCAATAGCTTTTGCTCGGCTATTTGCCAAGAAAGGGAATTTCC
CCACACGGTACTCAACACCAAGTTCCTTTACCTGCTCCTCAGTCTTCCCA
ACTGAAGCAACCTCAGGGTGTGTGTAGACAACTCCAGGGACCTTATCATA
GTCCACATGGCCATGTTTACCAGCTAAGAATTCAACACAAGCAACCCCAT
CCTCTTCTGCCTTGTGAGCTAACATTGGTCCTGGAATTACGTCTCCAATC
GCATAAACACCAGGTATGTTTGTAGCAAATCTCTCATTAACTGGTATCCG
TCCCATCTTATCGGTTTCCACTCCTATCTTATCCAGCCCGAGCCCAGCGG
TGAATGGAGTCCGGCCAG
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