CX046950

Overview
NameCX046950
Unique NameCX046950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:422..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.667e-74
Identity = 119/176 (67.61%), Postives = 138/176 (78.41%), Query Frame = -1
Query:  363 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 890
            AFQLY SGIFTG+CGT+LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SY                     P VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  270 AFQLYSSGIFTGKCGTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.149e-72
Identity = 116/183 (63.39%), Postives = 139/183 (75.96%), Query Frame = -1
Query:  342 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 890
            AFQLY+SGIF G CGT LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SY                     P  CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  278 AFQLYDSGIFDGSCGTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.839e-62
Identity = 104/183 (56.83%), Postives = 128/183 (69.95%), Query Frame = -1
Query:  339 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 887
            FQ Y+SGIFTG+CGT++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                     P  CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  160 FQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 9.129e-62
Identity = 108/180 (60.00%), Postives = 124/180 (68.89%), Query Frame = -1
Query:  366 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 887
            FQLY SG+F+GRCGTSLDHGV AVGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASY                     P       VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  284 FQLYHSGVFSGRCGTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 7.746e-53
Identity = 96/181 (53.04%), Postives = 111/181 (61.33%), Query Frame = -1
Query:  363 FQLYESGIFTGRCGTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXPAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 887
            FQLY+SG+FTGRCGT+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  299 FQLYDSGVFTGRCGTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.738e-28
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = -1
Query:  669 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            FQ Y+SGIFTG CGT+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  287 FQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.269e-28
Identity = 56/74 (75.68%), Postives = 66/74 (89.19%), Query Frame = -1
Query:  669 AFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 890
            AFQ Y+SGIFTG+CGT++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  241 AFQHYQSGIFTGKCGTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  669 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            FQLYESG+F G CGT+L+HGV  VGYGTENG DYWIVKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  286 FQLYESGVFDGTCGTNLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.391e-24
Identity = 51/74 (68.92%), Postives = 56/74 (75.68%), Query Frame = -1
Query:  669 FQLYESGIFTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            FQ Y  G+FTGRCGT LDHGV  VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASY
Sbjct:  271 FQFYSEGVFTGRCGTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
BLAST of CX046950 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.784e-24
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = -1
Query:  669 FQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 887
            FQLYESG+F G CGT+L+HGV  VGYGTENG DYW+VKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  279 FQLYESGVFDGSCGTNLNHGVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASY 350          
The following BLAST results are available for this feature:
BLAST of CX046950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
ORYA_ORYSJ4.667e-7467.61Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.149e-7263.39Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC1.839e-6256.83Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ9.129e-6260.00Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ7.746e-5353.04Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH1.738e-2875.34Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA2.269e-2875.68Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR4_ARATH1.988e-2469.86Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CYSP_HEMSP3.391e-2468.92Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CPR3_ARATH5.784e-2468.49Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B12-D24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046950 ID=CX046950; Name=CX046950; organism=Citrus sinensis; type=EST; length=890bp
TTTTTTTTTTTTTTTTCGTTAAATATCAATTCATAAAAGCCTCCGCTGAA
TGATGCCAGGGATTTGGTGGAGGACATTGGAAATAGATAACAACAATTTG
TTTGTGCATTGTTCGGATTCAACGCAAATAGATAACTTACAACGCTATAT
ACAAAACCAACGTCCGAATAAATATTTAACAGACCATCCACCTGCCGGTA
CATTAACGTTTGAAATGAAATGCAGTAAAATGAACTAAGGCCGGGGAGAA
ACTCATTCACAAGCACGAATATCTTCATCCTCCCTTCGGCCTTCCACTGC
TCTTACAGTGCCAACTATAATTAAGCACTGCTACTTCCACCTTGATTTCC
ATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTCGCAATGCCCTCACTCCCA
ATGGGTTGTCCTTGCTCATCAAGCAGGTCCCAGCACGAACATTACAGATG
GGATAGTCATGTGGGCAGCAGCTATAGTGGTCATCACAGCAGGTGGCAGC
CTCAAGCGGGCAGCATCCCCATGCAAAGCAAGAGTTACCATACTCAAAGA
CACAGCAGCAAGTGTTGCTCTCAGGGCAAGAGTAATAATTGTCACACACA
GCAGGAGGCTTTGTTGGAGATGGAGGAGACGGTCCGGGGTTGGGAGGATT
TTGGCCTTTCTTTATGGGATATGAGGCCTCCATGGCAATTCCACACTTGC
CCGTGAGAGTGCCAGCCACGTTACGCTCCATCCTAATATAGCCACCCTCT
CCCCAGCTACTGCCCCATGAATTCTTCACAATCCAGTAATCAGCTCCATT
TTCTGTGCCATATCCAACAGCAGTAACACCATGGTCCAGAGATGTCCCAC
ATCTTCCCGTAAATATACCCGATTCATATAACTGGAATGC
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