CX046937
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 6.090e-73 Identity = 133/255 (52.16%), Postives = 185/255 (72.55%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 765 +E++PSDAG DR V+QE++K +A+++ ++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRCL +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQYPF ++Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+ Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2) HSP 1 Score: 273.478 bits (698), Expect = 1.039e-72 Identity = 134/255 (52.55%), Postives = 184/255 (72.16%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 765 +E++PSDAG DR V+QE++K +A+++ ++T +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRCL +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQYPF +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+ Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1) HSP 1 Score: 270.396 bits (690), Expect = 8.795e-72 Identity = 132/255 (51.76%), Postives = 183/255 (71.76%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 765 +E++PSDAG DR V+QE++K +A+++ ++T ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV IRSRCL +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQYPF +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+ Sbjct: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1) HSP 1 Score: 251.136 bits (640), Expect = 5.521e-66 Identity = 120/254 (47.24%), Postives = 174/254 (68.50%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 762 +E++P +AG DR V+Q +IKE+A++ PID+ FK+++LNEVDKLS++AQH+LRRTMEKY+ CRLILCC+S++KV + I+SRCL IR+ +P++E+I KVL +A E LPS A +A++S +LR A++ E+ + +QYPF+ + +P +DWE ++ +I D +EQSP RL VRGKLYE D +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK + Sbjct: 93 IEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.247e-59 Identity = 115/257 (44.75%), Postives = 166/257 (64.59%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVA 771 +E++PSD G DR VVQ+++KE+A+ + +D K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL NS++ + IRSRCL +R+ +PT ++I VL AKKEG + G R+AE+S R+LRRA+L +E Q D+ IP DWE + +IA +IM+E +P R+ QVR KLY+ D +K +V +W+A+YEH++R G K IFHLEAFVAKFM I++ +L++ Sbjct: 93 LEITPSDVGNYDRVVVQDLLKEVAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLIPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMS 349
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.753e-49 Identity = 102/255 (40.00%), Postives = 153/255 (60.00%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKD----NQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 753 +E++PSD G DR ++QE++K++A++ +D + K+ FKV+V+N D+L+R+AQ +LRRTMEKYS + RLIL NS+SK+ E IRSR L +R+ +PT E+I+ V+ I +GL+ P +A +R+LR+AIL ET + K +P DW+ F+ ++ ++QEQSP R+ VR LY+ D ++ + AA YEH+ R GNK+IFHLEAFVA FM +Y Sbjct: 92 LEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC5_YEAST (Replication factor C subunit 5 OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.793e-32 Identity = 81/257 (31.52%), Postives = 141/257 (54.86%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE--XXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 744 +E++PSD G DR V+QE++KE+A+ +D + + +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S + I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+ + + K + I DW + ++ I++E+S L + R LY+ + K + +++ ++ ++ GNKAIFHLE F+AK M Sbjct: 94 LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFCS2_MIMIV (Putative replication factor C small subunit L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.410e-21 Identity = 66/243 (27.16%), Postives = 120/243 (49.38%), Query Frame = 1 Query: 34 DRYVVQEVIKEMAKNRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQ----VRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAE-IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 744 D+Y++QE+IK+ A ++ D K KR FK +V++ ++ L+ +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RSRC + PT E I V+++IA E ++L + + N +L+ AI F C K P + +E + I++ ++ K +F+ +R +Y D + I + +A+ E+ + G + I +E F++ M Sbjct: 101 DKYILQEIIKQYAMHKSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIW-FLNC-------KGLNCSPFIALDEAFDLVVESILECRTGKNIFKIHNDIRTNIYNILITNIKGSEIINILVDKLIRKIDDDVINMNIIQYASKAEYNLTHGRRDITDIEYFISGVM 335
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFCS_PYRHO (Replication factor C small subunit OS=Pyrococcus horikoshii GN=rfcS PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19 Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 405 +EL+ SD + V++E +KE A+ +PI G FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC R +E I K L +IA+ EGL+L + + +RRAI Sbjct: 607 LELNASDE--RGINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 736
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFCS_PYRFU (Replication factor C small subunit OS=Pyrococcus furiosus GN=rfcS PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19 Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 1 Query: 1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 405 +EL+ SD + V++E +KE A+ +PI G FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC R +E I K L +IA+ EGL+L + + +RRAI Sbjct: 605 LELNASDE--RGINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 734 The following BLAST results are available for this feature:
BLAST of CX046937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046937 ID=CX046937; Name=CX046937; organism=Citrus sinensis; type=EST; length=832bpback to top |