CX046937

Overview
NameCX046937
Unique NameCX046937
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 6.090e-73
Identity = 133/255 (52.16%), Postives = 185/255 (72.55%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 765
            +E++PSDAG  DR V+QE++K +A+++ ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYPF ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                       D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 1.039e-72
Identity = 134/255 (52.55%), Postives = 184/255 (72.16%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 765
            +E++PSDAG  DR V+QE++K +A+++ ++T  +R FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYPF  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                       D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.795e-72
Identity = 132/255 (51.76%), Postives = 183/255 (71.76%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 765
            +E++PSDAG  DR V+QE++K +A+++ ++T  ++ FKV++L EVDKL+++AQH+LRRTMEKY ++CRLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQYPF  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                       D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:   93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.521e-66
Identity = 120/254 (47.24%), Postives = 174/254 (68.50%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 762
            +E++P +AG  DR V+Q +IKE+A++ PID+     FK+++LNEVDKLS++AQH+LRRTMEKY+  CRLILCC+S++KV + I+SRCL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +QYPF+  + +P +DWE ++ +I  D  +EQSP RL  VRGKLYE                       D  +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK +
Sbjct:   93 IEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.247e-59
Identity = 115/257 (44.75%), Postives = 166/257 (64.59%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVA 771
            +E++PSD G  DR VVQ+++KE+A+ + +D   K+ FKV+V+NE D L+R+AQ +LRRTMEKYS + RLIL  NS++ +   IRSRCL +R+ +PT ++I  VL   AKKEG  +  G   R+AE+S R+LRRA+L +E    Q     D+  IP  DWE  + +IA +IM+E +P R+ QVR KLY+                       D  +K +V +W+A+YEH++R G K IFHLEAFVAKFM I++ +L++
Sbjct:   93 LEITPSDVGNYDRVVVQDLLKEVAQTQQVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLIPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMS 349          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.753e-49
Identity = 102/255 (40.00%), Postives = 153/255 (60.00%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKD----NQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 753
            +E++PSD G  DR ++QE++K++A++  +D + K+ FKV+V+N  D+L+R+AQ +LRRTMEKYS + RLIL  NS+SK+ E IRSR L +R+ +PT E+I+ V+  I   +GL+ P      +A   +R+LR+AIL  ET   +    K        +P  DW+ F+ ++   ++QEQSP R+  VR  LY+                       D ++   +   AA YEH+ R GNK+IFHLEAFVA FM +Y
Sbjct:   92 LEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFC5_YEAST (Replication factor C subunit 5 OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.793e-32
Identity = 81/257 (31.52%), Postives = 141/257 (54.86%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRG-----FKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE--XXXXXXXXXXXXXXXXXXXXXXXDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 744
            +E++PSD G  DR V+QE++KE+A+   +D +  +      +K +++NE + L+++AQ +LRRTMEKYS + RLI+ C+S S +   I+SRCL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+  +  +   K +  I   DW   + ++   I++E+S   L + R  LY+                         +   K  +  +++ ++ ++  GNKAIFHLE F+AK M
Sbjct:   94 LEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFCS2_MIMIV (Putative replication factor C small subunit L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.410e-21
Identity = 66/243 (27.16%), Postives = 120/243 (49.38%), Query Frame = 1
Query:   34 DRYVVQEVIKEMAKNRPIDT-KGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQ----VRGKLYEXXXXXXXXXXXXXXXXXXXXXXXDAE-IKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 744
            D+Y++QE+IK+ A ++  D  K KR FK +V++ ++ L+  +Q +LRRTME+Y+ +CR I+ CN+ SK+ + +RSRC    +  PT E I  V+++IA  E ++L       + +  N +L+ AI  F  C       K     P +  +E    +   I++ ++ K +F+    +R  +Y                        D + I   +  +A+  E+ +  G + I  +E F++  M
Sbjct:  101 DKYILQEIIKQYAMHKSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVPLPTIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIW-FLNC-------KGLNCSPFIALDEAFDLVVESILECRTGKNIFKIHNDIRTNIYNILITNIKGSEIINILVDKLIRKIDDDVINMNIIQYASKAEYNLTHGRRDITDIEYFISGVM 335          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFCS_PYRHO (Replication factor C small subunit OS=Pyrococcus horikoshii GN=rfcS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 405
            +EL+ SD   +   V++E +KE A+ +PI   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC   R     +E I K L +IA+ EGL+L       +   +   +RRAI
Sbjct:  607 LELNASDE--RGINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 736          
BLAST of CX046937 vs. ExPASy Swiss-Prot
Match: RFCS_PYRFU (Replication factor C small subunit OS=Pyrococcus furiosus GN=rfcS PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.877e-19
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 1
Query:    1 VELSPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKRGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAI 405
            +EL+ SD   +   V++E +KE A+ +PI   G   FK++ L+E D L+++AQ +LRRTME +S++ R IL CN SSK+ E I+SRC   R     +E I K L +IA+ EGL+L       +   +   +RRAI
Sbjct:  605 LELNASDE--RGINVIREKVKEFARTKPI---GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAI 734          
The following BLAST results are available for this feature:
BLAST of CX046937 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RFC3_MOUSE6.090e-7352.16Replication factor C subunit 3 OS=Mus musculus GN=... [more]
RFC3_HUMAN1.039e-7252.55Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
RFC3_BOVIN8.795e-7251.76Replication factor C subunit 3 OS=Bos taurus GN=RF... [more]
RFC3_DICDI5.521e-6647.24Probable replication factor C subunit 3 OS=Dictyos... [more]
RFC5_NEUCR2.247e-5944.75Replication factor C subunit 5 OS=Neurospora crass... [more]
RFC5_SCHPO2.753e-4940.00Replication factor C subunit 5 OS=Schizosaccharomy... [more]
RFC5_YEAST1.793e-3231.52Replication factor C subunit 5 OS=Saccharomyces ce... [more]
RFCS2_MIMIV5.410e-2127.16Putative replication factor C small subunit L478 O... [more]
RFCS_PYRHO3.877e-1940.74Replication factor C small subunit OS=Pyrococcus h... [more]
RFCS_PYRFU3.877e-1940.74Replication factor C small subunit OS=Pyrococcus f... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B05-D10-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046937 ID=CX046937; Name=CX046937; organism=Citrus sinensis; type=EST; length=832bp
GTGGAATTGAGTCCTAGTGATGCAGGCTTTCAGGACAGATATGTAGTTCA
AGAGGTAATTAAAGAGATGGCTAAGAATAGACCTATTGACACAAAAGGGA
AAAGAGGATTCAAAGTGTTAGTACTGAACGAGGTTGACAAGCTTTCTAGG
GAAGCCCAGCATTCTCTTCGGAGAACAATGGAGAAATATAGTGCTTCTTG
CCGACTAATTTTATGCTGCAACAGTTCTTCAAAAGTCACTGAAGCAATCC
GGTCTCGTTGCTTGAATATACGAATCAATTCACCAACAGAAGAACAGATT
GTTAAGGTACTGGAGTTTATTGCAAAGAAAGAGGGACTGCAACTTCCATC
TGGATTTGCCACTCGTTTAGCAGAAAAATCGAATCGGAGTTTAAGGAGGG
CTATATTGTCATTTGAAACTTGCCGTGTCCAACAGTATCCTTTTAAAGAC
AATCAAGCAATACCTGCTATGGACTGGGAGGAATTTGTTTTTGAAATAGC
ATCGGACATAATGCAGGAGCAGAGCCCAAAAAGGCTGTTTCAGGTTCGAG
GGAAGTTGTATGAACTGCTTCTAAATTGTGTTCCTCCAGTGGTTGTATTG
AAGAGGCTGCTATATGAATTATTGAAGAGGTTGGATGCTGAAATAAAGCA
TGAGGTCTGTCACTGGGCTGCATATTATGAACATAAGATGCGTCGTGGAA
ATAAAGCCATATTTCACCTTGAAGCATTCGTGGCCAAGTTCATGAGTATT
TACAAGGGTTTCCTTGTCGCAACATTTGGCTGAAGACAGCTTAGCATCAC
ATTTGTGTCGGAGCAAGTTATTTCATTCTACT
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