CX046936
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 1.182e-51 Identity = 100/194 (51.55%), Postives = 133/194 (68.56%), Query Frame = -1 Query: 199 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 780 KY ++CRLILCCNS+SKV IRSRCL +R+ +P+ E I VL + +KEGL LPS A RLAEKS R+LR+A+L E CRVQQYPF ++Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+ Sbjct: 154 KYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2) HSP 1 Score: 202.601 bits (514), Expect = 2.016e-51 Identity = 101/194 (52.06%), Postives = 132/194 (68.04%), Query Frame = -1 Query: 199 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 780 KY ++CRLILCCNS+SKV IRSRCL +R+ +P+ E I VL + KKEGL LPS A RLAEKS R+LR+A+L E CRVQQYPF +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+ Sbjct: 154 KYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 7.660e-51 Identity = 100/194 (51.55%), Postives = 131/194 (67.53%), Query Frame = -1 Query: 199 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 780 KY ++CRLILCCNS+SKV IRSRCL +R+ +P+ E I VL + KKEGL LP A RLAEKS R+LR+A+L E CRVQQYPF +Q IP DWE ++ E A+ I+ +Q+P+RL +VRG+LYE D ++K EV AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+ Sbjct: 154 KYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 4.071e-44 Identity = 87/193 (45.08%), Postives = 125/193 (64.77%), Query Frame = -1 Query: 202 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 780 KY+ CRLILCC+S++KV + I+SRCL IR+ +P++E+I KVL +A E LPS A +A++S +LR A++ E+ + +QYPF+ + +P +DWE ++ +I D +EQSP RL VRGKLYE LD +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK + Sbjct: 154 KYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.355e-39 Identity = 83/196 (42.35%), Postives = 119/196 (60.71%), Query Frame = -1 Query: 193 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVA 780 KYS + RLIL NS++ + IRSRCL +R+ +PT ++I VL AKKEG + G R+AE+S R+LRRA+L +E Q D+ IP DWE + +IA +IM+E +P R+ QVR KLY+ +D +K +V +W+A+YEH++R G K IFHLEAFVAKFM I++ +L++ Sbjct: 154 KYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLIPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMS 349
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.150e-30 Identity = 73/194 (37.63%), Postives = 105/194 (54.12%), Query Frame = -1 Query: 211 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKD----NQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 780 KYS + RLIL NS+SK+ E IRSR L +R+ +PT E+I+ V+ I +GL+ P +A +R+LR+AIL ET + K +P DW+ F+ ++ ++QEQSP R+ VR LY+ +D ++ + AA YEH+ R GNK+IFHLEAFVA FM +Y Sbjct: 153 KYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC5_YEAST (Replication factor C subunit 5 OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17 Identity = 56/191 (29.32%), Postives = 96/191 (50.26%), Query Frame = -1 Query: 220 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE--XXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 780 KYS + RLI+ C+S S + I+SRCL IR +P++ +I +L + E +QL + R+A+ SN +LR ++L E+ + + K + I DW + ++ I++E+S L + R LY+ L+ K + +++ ++ ++ GNKAIFHLE F+AK M Sbjct: 160 KYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350 The following BLAST results are available for this feature:
BLAST of CX046936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX046936 ID=CX046936; Name=CX046936; organism=Citrus sinensis; type=EST; length=780bpback to top |