CX046936

Overview
NameCX046936
Unique NameCX046936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9061 contig Csv1_Contig9061:361..1141. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_MOUSE (Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.182e-51
Identity = 100/194 (51.55%), Postives = 133/194 (68.56%), Query Frame = -1
Query:  199 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 780
            KY ++CRLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + +KEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYPF ++Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                       D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:  154 KYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347          
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_HUMAN (Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.016e-51
Identity = 101/194 (52.06%), Postives = 132/194 (68.04%), Query Frame = -1
Query:  199 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 780
            KY ++CRLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + KKEGL LPS  A RLAEKS R+LR+A+L  E CRVQQYPF  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                       D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:  154 KYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347          
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_BOVIN (Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.660e-51
Identity = 100/194 (51.55%), Postives = 131/194 (67.53%), Query Frame = -1
Query:  199 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFL 780
            KY ++CRLILCCNS+SKV   IRSRCL +R+ +P+ E I  VL  + KKEGL LP   A RLAEKS R+LR+A+L  E CRVQQYPF  +Q IP  DWE ++ E A+ I+ +Q+P+RL +VRG+LYE                       D ++K EV   AAYYEH+++ G+KAI+HLEAFVAKFM++YK F+
Sbjct:  154 KYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFM 347          
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC3_DICDI (Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.071e-44
Identity = 87/193 (45.08%), Postives = 125/193 (64.77%), Query Frame = -1
Query:  202 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGF 780
            KY+  CRLILCC+S++KV + I+SRCL IR+ +P++E+I KVL  +A  E   LPS  A  +A++S  +LR A++  E+ + +QYPF+  + +P +DWE ++ +I  D  +EQSP RL  VRGKLYE                      LD  +K E+ HWA+YYEH+ + G+K IFHLEAF+AKFMS+YK +
Sbjct:  154 KYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQSTE-LPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345          
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC5_NEUCR (Replication factor C subunit 5 OS=Neurospora crassa GN=B14D6.460 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.355e-39
Identity = 83/196 (42.35%), Postives = 119/196 (60.71%), Query Frame = -1
Query:  193 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIYKGFLVA 780
            KYS + RLIL  NS++ +   IRSRCL +R+ +PT ++I  VL   AKKEG  +  G   R+AE+S R+LRRA+L +E    Q     D+  IP  DWE  + +IA +IM+E +P R+ QVR KLY+                      +D  +K +V +W+A+YEH++R G K IFHLEAFVAKFM I++ +L++
Sbjct:  154 KYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLIPLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMS 349          
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC5_SCHPO (Replication factor C subunit 5 OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.150e-30
Identity = 73/194 (37.63%), Postives = 105/194 (54.12%), Query Frame = -1
Query:  211 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPSGFATRLAEKSNRSLRRAILSFETCRVQQYPFKD----NQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYEXXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFMSIY 780
            KYS + RLIL  NS+SK+ E IRSR L +R+ +PT E+I+ V+  I   +GL+ P      +A   +R+LR+AIL  ET   +    K        +P  DW+ F+ ++   ++QEQSP R+  VR  LY+                      +D ++   +   AA YEH+ R GNK+IFHLEAFVA FM +Y
Sbjct:  153 KYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSFFLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346          
BLAST of CX046936 vs. ExPASy Swiss-Prot
Match: RFC5_YEAST (Replication factor C subunit 5 OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.541e-17
Identity = 56/191 (29.32%), Postives = 96/191 (50.26%), Query Frame = -1
Query:  220 KYSASCRLILCCNSSSKVTEAIRSRCLNIRINSPTEEQIVKVLEFIAKKEGLQLPS-GFATRLAEKSNRSLRRAILSFETCRV-QQYPFKDNQAIPAMDWEEFVFEIASDIMQEQSPKRLFQVRGKLYE--XXXXXXXXXXXXXXXXXXXXXXLDAEIKHEVCHWAAYYEHKMRRGNKAIFHLEAFVAKFM 780
            KYS + RLI+ C+S S +   I+SRCL IR  +P++ +I  +L  +   E +QL +     R+A+ SN +LR ++L  E+  +  +   K +  I   DW   + ++   I++E+S   L + R  LY+                        L+   K  +  +++ ++ ++  GNKAIFHLE F+AK M
Sbjct:  160 KYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350          
The following BLAST results are available for this feature:
BLAST of CX046936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RFC3_MOUSE1.182e-5151.55Replication factor C subunit 3 OS=Mus musculus GN=... [more]
RFC3_HUMAN2.016e-5152.06Replication factor C subunit 3 OS=Homo sapiens GN=... [more]
RFC3_BOVIN7.660e-5151.55Replication factor C subunit 3 OS=Bos taurus GN=RF... [more]
RFC3_DICDI4.071e-4445.08Probable replication factor C subunit 3 OS=Dictyos... [more]
RFC5_NEUCR1.355e-3942.35Replication factor C subunit 5 OS=Neurospora crass... [more]
RFC5_SCHPO1.150e-3037.63Replication factor C subunit 5 OS=Schizosaccharomy... [more]
RFC5_YEAST5.541e-1729.32Replication factor C subunit 5 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11B05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B05-D10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046936 ID=CX046936; Name=CX046936; organism=Citrus sinensis; type=EST; length=780bp
TTTTTTTTTTTTTTTTTAAATTTAAAGATTCCTTGACATCTATCTCAGTT
AAACAAAATTAGTCCACCAACAGAGATGAAAAAACACTTTTCACAGGACA
TTTAGGAGAGACTAATGAACACTAAAACCGAGTAGAATGAAATTAACTTG
CTCCGACACAAATGTGATGCTAAGCTGTCTTCAGCCAAATGTTGCGACAA
GGAAACCCTTGTAAATACTCATGAACTTGGCCACGAATGCTTCAAGGTGA
AATATGGCTTTATTTCCACGACGCATCTTATGTTCATAATATGCAGCCCA
GTGACAGACCTCATGCTTTATTTCAGCATCCAACCTCTTCAATAATTCAT
ATAGCAGCCTCTTCAATACAACCACTGGAGGAACACAATTTAAAAGCAGT
TCATACAACTTCCCTCGAACCTGAAACAGCCTTTTTGGGCTCTGCTCCTG
CATTATGTCCGATGCTATTTCAAAAACAAATTCCTCCCAGTCCATAGCAG
GTATTGCTTGATTGTCTTTAAAAGGATACTGTTGGACACGGCAAGTTTCA
AATGACAATATAGCCCTCCTTAAACTCCGATTCGATTTTTCTGCTAAACG
AGTGGCAAATCCAGATGGAAGTTGCAGTCCCTCTTTCTTTGCAATAAACT
CCAGTACCTTAACAATCTGTTCTTCTGTTGGTGAATTGATTCGTATATTC
AAGCAACGAGACCGGATTGCTTCAGTGACTTTTGAAGAACTGTTGCAGCA
TAAAATTAGTCGGCAAGAAGCACTATATTT
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