CX046930

Overview
NameCX046930
Unique NameCX046930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4925 contig Csv1_Contig4925:559..1382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_CITSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Citrus sinensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.444e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL
Sbjct:  185 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 281
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lotus japonicus GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.287e-48
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQP+GF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGGSN+
Sbjct:  185 LSNSLSTVDIVDAQSKYGFWGWNLWRQPMGFVVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGSNI 281
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_PHAVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Phaseolus vulgaris GN=ndhA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.987e-48
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQP+GF+VFLISSLAECERLPFDLPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSN+
Sbjct:  185 LSNSLSTVDIVDAQSKYGFWGWNLWRQPMGFLVFLISSLAECERLPFDLPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNI 281
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3)

HSP 1 Score: 191.815 bits (486), Expect = 3.902e-48
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NL
Sbjct:  189 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNL 285
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Solanum lycopersicum GN=ndhA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.902e-48
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NL
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNL 281
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_NICSY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana sylvestris GN=ndhA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.902e-48
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFY+ASYLNLLVSSLFVTVLYLGG NL
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIASYLNLLVSSLFVTVLYLGGWNL 281
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_JASNU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.692e-48
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNS STVDIV AQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NL
Sbjct:  186 LSNSFSTVDIVEAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNL 282
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_AETGR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema grandiflora GN=ndhA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.692e-48
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNI 281
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_AETCO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema cordifolium GN=ndhA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.692e-48
Identity = 92/97 (94.85%), Postives = 95/97 (97.94%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGFI+FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL+SSLFVTVLYLGG N+
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFIIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLISSLFVTVLYLGGWNI 281
[Close]
BLAST of CX046930 vs. ExPASy Swiss-Prot
Match: NU1C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus occidentalis GN=ndhA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.135e-47
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = -2 
Query:    2 LSNSLSTVDIVGAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 292
            LSNSLSTVDIV AQSKYGFWGWNLWRQPIGF VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NL
Sbjct:  185 LSNSLSTVDIVEAQSKYGFWGWNLWRQPIGFAVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNL 281
The following BLAST results are available for this feature:
BLAST of CX046930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CITSI5.444e-50100.00NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LOTJA2.287e-4894.85NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHAVU2.987e-4894.85NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_TOBAC3.902e-4896.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SOLLC3.902e-4896.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NICSY3.902e-4896.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_JASNU8.692e-4896.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AETGR8.692e-4894.85NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AETCO8.692e-4894.85NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PLAOC1.135e-4796.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11B01_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11B01-D2-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046930 ID=CX046930; Name=CX046930; organism=Citrus sinensis; type=EST; length=824bp
AAAGATTCGAACCTCCCAAGTAAAGAACTGTTACAAATAATGAGGAAACT
AGTAGATTTAGATAGGAAGCAACGTAAAATAAACCAAATTTTATTCCTGA
ATATTCGGTTTGATAACCGGCTACTAATTCTTCTTCCGCTTCTGGTAAAT
CAAAAGGTAATCTCTCGCATTCCGCTAGGGAAGAAATTAGAAAAACGATA
AACCCTATAGGTTGACGCCACAAATTCCACCCCCAAAAACCATATTTTGA
TTGCGCCCCAACTATATCAACTGTACTTAAACTGTTAGATAATCATAGTC
GGTGGTAACATTACGGTTTCCATCGCTATTACAAAACCGTACATGAGATT
TTCACCTCATACGGCTCCTCAGGGCCACAAATAAATGTAAGGACCGGACC
GGTATTAGTTATTTTGATTTTTATATGGTTATAGGATGGATAAAGTCAAA
ATCTAGCGGAGGATCCCCAATTATACCACTGGAATTCTGTCTGCTCTAAG
GATAAAAAAACAGTATTTCTGAATTAATCTCATCCTTTACGAATTTCAAA
TTTTCTGTGTTGAGTAATAACTTAATCAACCCTTCAATAAAATACTCTTG
TAGAAATATCACTCGATATTTCAACCCATCCTTTTATTTTCGATTACGAA
AAAGAATTCGCCATTACACTAGTTCATGAATCATGACACGAATTTGATTT
CTATCAATATATGAAAGAAAGGATTCTTTTAGATTGTAATTGTATTTTTT
CTATTTTTTTGTTCCTCTTCTTCTTTCTGAGATAAAATGGGGCTTAAAAG
GGGGTAAAGGATTATTTCGTTCCT
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