CX046914

Overview
NameCX046914
Unique NameCX046914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3815 contig Csv1_Contig3815:398..1255. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.901e-77
Identity = 142/229 (62.01%), Postives = 171/229 (74.67%), Query Frame = -3
Query:  173 RDRVSLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLIAEAATDP-NWTGDCAIYCHRTGELITLPYNAAMPVSLKVLEHEIFTVTPIKVLSPGFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFEYDSNSGLVTFGLEKLPDEDKKVHFVDVAL 856
            RD VSLLKIWNMNKYTGVLGVYNCQGAAW+ TERKN FH+T +D++TG IRGRDVH I+EA+TDP  W GDCA+Y    GELI +PYN ++PVSLK+ EHEIFTV+PI  L  G SFAP+GLVNM+N+GGAIEGL+Y  E   K+                      KV MEVKGCGKFG+Y+S KP+RC V+SNE+ FEYDS+SGLVTF L+K+P E+K+ H + V L
Sbjct:  546 RDGVSLLKIWNMNKYTGVLGVYNCQGAAWSSTERKNIFHQTKTDSLTGSIRGRDVHSISEASTDPTTWNGDCAVYSQSRGELIVMPYNVSLPVSLKIREHEIFTVSPISHLVDGVSFAPIGLVNMYNSGGAIEGLRYEAE---KM----------------------KVVMEVKGCGKFGSYSSVKPKRCVVESNEIAFEYDSSSGLVTFELDKMPIENKRFHLIQVEL 749          
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 98/224 (43.75%), Postives = 151/224 (67.41%), Query Frame = -3
Query:  191 RDRVSLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLIAEAATDPNWTGDCAIYCHRTGELITLPYNAAMPVSLKVLEHEIFTVTPIKVLSPGFSFAPLGLVNMFNAGGAIEG--LKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFEYDSNSGLVTFGLEKLPDEDKKVH 856
            RD +SLLKIWNMNK+TG++GV+NCQGA W K  +KN  H+T+   +TG IR  D  LI++ A + +W+GD  +Y +R+GE++ LP  A++P++LKVLE+E+F ++P+K ++   SFAP+GLV+MFN+ GAIE   + +V +   +  + +        ++N S   +  VS+ V+GCG+FGAY+S +P +C V+S E +F YD+  GLVT  L    +E  + H
Sbjct:  548 RDGISLLKIWNMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSPGTLTGSIRADDADLISQVAGE-DWSGDSIVYAYRSGEVVRLPKGASIPLTLKVLEYELFHISPLKEITENISFAPIGLVDMFNSSGAIESIDINHVTDKNPEFFDGEISSASPALSDNRSPTAL--VSVSVRGCGRFGAYSSQRPLKCAVESTETDFTYDAEVGLVTLNLPVTREEMFRWH 768          
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.725e-44
Identity = 96/229 (41.92%), Postives = 136/229 (59.39%), Query Frame = -3
Query:  173 RDRVSLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLIAEAATDPNWTGDCAIYCHRTGELITLPYNAAMPVSLKVLEHEIFTVTPIKVLSPGFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASA-KPRRCTVDSNEVEFEYDSNSGLVTFGLEKLPDEDKKVHFVDVAL 856
            RD  SLLKIWN+N++TGV+GV+NCQGA W K E++   H+     I+G +R  DVH + + A    WTGD  +Y H  GEL+ LP + ++PV+L   E+E+FTV P+K  S G  FAP+GL+ MFN+GGAI  L+Y  EG   +                       V M+++G G  G Y+S  +PR  TVDS++VE+ Y+  SGLVTF    L   +K+++  DV +
Sbjct:  552 RDNKSLLKIWNLNEFTGVIGVFNCQGAGWCKNEKRYLIHDQEPGTISGCVRTNDVHYLHKVAAF-EWTGDSIVYSHLRGELVYLPKDTSLPVTLMPREYEVFTVVPVKEFSDGSKFAPVGLMEMFNSGGAIVSLRYDDEGTKFV-----------------------VRMKLRGSGLVGVYSSVRRPRSVTVDSDDVEYRYEPESGLVTF---TLGVPEKELYLWDVVI 753          
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.429e-24
Identity = 68/199 (34.17%), Postives = 98/199 (49.25%), Query Frame = -3
Query:  254 SLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLI-AEAATDPNWTGDCAIYCHRTGELITLPYNAAMPVSLKVLEHEIFTVTPIKVLSPG-FSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFEYD 844
            ++LKIWN+NKY GVLG++NCQG  W    R+N      S A+T      D+     +   D       A+Y  +  +L  +  +  + VSL+    E+ TV+P+KV S     FAP+GLVNM N+GGA++ L           E DD                  V + V+GCG+   +AS KP  C +D   VEF+Y+
Sbjct:  602 TMLKIWNLNKYAGVLGLFNCQGGGWCPETRRNKSASEFSHAVTCYASPEDIEWCNGKTPMDIKGVDVFAVYFFKEKKLSLMKCSDRLEVSLEPFSFELMTVSPLKVFSKRLIQFAPIGLVNMLNSGGAVQSL-----------EFDDS--------------ASLVKIGVRGCGELSVFASEKPVCCKIDGVSVEFDYE 775          
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.210e-23
Identity = 72/210 (34.29%), Postives = 110/210 (52.38%), Query Frame = -3
Query:  233 DRVSLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLIAEAATDPNWTGDCAIYCHRTGELITLPYNAAMPVSLKVLEHEIFTVTPIK-VLSP--GFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFEYDSNSGLVT 853
            D  ++LKIWN+NK++GVLG +NCQG  W++  R+N      S  +T +    DV    E +         A+Y     +L  L  + ++ ++L+   +E+  V P++ ++SP  G  FAP+GL NM NAGGA++G     E   K         GD  AE           + VKG G+  AY+SA+PR C V+  + EF+Y+   G+VT
Sbjct:  584 DGKTMLKIWNVNKFSGVLGAFNCQGGGWSREARRNMCAAGFSVPVTARASPADV----EWSHGGGGGDRFAVYFVEARKLQLLRRDESVELTLEPFTYELLVVAPVRAIVSPELGIGFAPIGLANMLNAGGAVQGF----EAARK--------DGDVAAE-----------VAVKGAGEMVAYSSARPRLCKVNGQDAEFKYE--DGIVT 764          
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.747e-22
Identity = 60/213 (28.17%), Postives = 112/213 (52.58%), Query Frame = -3
Query:  230 DRVSLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLIAE---AATDPNWTGDCAIYCHRTGELITLPYNA-AMPVSLKVLEHEIFTVTPI-KVLSPGFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFEYDSNSGLVTF 853
            D+ S+LKI+N NK+ GV+G +NCQGA W+  E +   ++     ++G +   D+        A +   +TGD  +Y  ++ E++ +   + AM ++L+    ++ +  P+ +++S G  F PLGL+NMFN  G ++ +K                 GD             + ++VKG G+F AY+S+ P +C ++  E EF+++  +G ++F
Sbjct:  672 DKESILKIFNFNKFGGVIGTFNCQGAGWSPEEHRFKGYKECYTTVSGTVHVSDIEWDQNPEAAGSQVTYTGDYLVYKQQSEEILFMNSKSEAMKITLEPSAFDLLSFVPVTELVSSGVRFVPLGLINMFNCVGTVQDMKVT---------------GDN-----------SIRVDVKGEGRFMAYSSSAPVKCYLNDKEAEFKWEEETGKLSF 858          
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.620e-21
Identity = 64/210 (30.48%), Postives = 99/210 (47.14%), Query Frame = -3
Query:  236 DRVSLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLIAEAATDPNWTG---DCAIYCHRTGELITLPYNAAMPVSLKVLEHEIFTVTPIKVL-SPGFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFEYDSNSGLV 853
            D  ++LKIWN+NKYTGV+G +NCQG  W +  R+N       + +T     +DV     + + P       + A++  ++ +L+    N  + ++L+  + E+ TV+P+  +      FAP+GLVNM N  GAI  L Y  E                            V + V G G+F  YAS KP  C +D   VEF Y+ +  +V
Sbjct:  586 DGKTMLKIWNLNKYTGVIGAFNCQGGGWCRETRRNQCFSECVNTLTATTSPKDVEW--NSGSSPISIANVEEFALFLSQSKKLLLSGLNDDLELTLEPFKFELITVSPVVTIEGNSVRFAPIGLVNMLNTSGAIRSLVYNDE---------------------------SVEVGVFGAGEFRVYASKKPVSCLIDGEVVEFGYEDSMVMV 766          
BLAST of CX046914 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.973e-19
Identity = 58/201 (28.86%), Postives = 94/201 (46.77%), Query Frame = -3
Query:  257 DRVSLLKIWNMNKYTGVLGVYNCQGAAWNKTERKNTFHETTSDAITGQIRGRDVHLIAEAATDP-NWTGDCAIYCHRTGELITLPYNA-AMPVSLKVLEHEIFTVTPIKVLSPGFSFAPLGLVNMFNAGGAIEGLKYVVEGGAKLTEIDDGYGGDQRAENCSNELVGKVSMEVKGCGKFGAYASAKPRRCTVDSNEVEFEY 853
            D  ++LKIWN NKY GV+G +NCQGA W+   +K          I G +   +V    +  T       +  +Y ++  EL  +   +  +  +++    E+++  P+  L  G  FAP+GL NMFN+GG +  L+YV  G                             ++VKG G F AY+S  P++  ++  EV+FE+
Sbjct:  654 DHTTVLKIWNFNKYGGVIGAFNCQGAGWDPIMQKFRGFPECYKPIPGTVHVTEVEWDQKEETSHLGKAEEYVVYLNQAEELSLMTLKSEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTNMFNSGGTVIDLEYVGNG---------------------------AKIKVKGGGSFLAYSSESPKKFQLNGCEVDFEW 827          
The following BLAST results are available for this feature:
BLAST of CX046914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS6_ARATH1.901e-7762.01Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH6.156e-5243.75Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH4.725e-4441.92Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA1.429e-2434.17Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ1.210e-2334.29Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS4_ARATH1.747e-2228.17Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH5.620e-2130.48Probable galactinol--sucrose galactosyltransferase... [more]
STSYN_PEA8.973e-1928.86Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_11A04_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11A04-B8-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046914 ID=CX046914; Name=CX046914; organism=Citrus sinensis; type=EST; length=858bp
TTTTTTAATAATAAAAGGGAGAAACAACTTTATTGAATTTCTTTCTCTAC
ATAAATTCCAAATGAAAATGATACGTTTTTTGGGGGAAATTTGGTGTGTT
ACCCTCCCACCACAGACCCCACGTTATACAAACTCATAATTTCTAGACTA
ATGTGGACATATTGATGATTTATAACGCAACATCCACGAAATGGACTTTC
TTATCCTCGTCAGGCAATTTCTCCAAGCCGAATGTGACTAGCCCAGAATT
TGAATCGTACTCAAATTCGACCTCATTTGAATCCACAGTGCACCTTCTTG
GCTTAGCTGATGCATAAGCACCGAACTTGCCACAACCTTTAACCTCCATG
CTGACCTTCCCCACCAATTCATTGCTACAATTCTCCGCTCTCTGATCACC
TCCATACCCATCATCAATCTCCGTTAACTTAGCGCCGCCTTCAACTACAT
ATTTGAGCCCCTCAATAGCACCACCAGCATTGAACATGTTGACGAGCCCC
AAGGGCGCAAAGCTAAAGCCGGGGGATAAAACCTTAATGGGTGTGACAGT
GAAGATTTCATGTTCAAGGACTTTAAGGGACACTGGCATTGCTGCATTGT
ACGGCAGGGTGATGAGTTCACCGGTCCGGTGACAGTAGATGGCGCAGTCA
CCGGTCCAATTGGGGTCCGTGGCAGCTTCAGCAATGAGGTGAACATCACG
GCCCCTAATTTGCCCTGTTATTGCATCACTTGTGGTTTCGTGGAACGTGT
TCTTCCTCTCAGTTTTGTTCCAAGCCGCTCCTTGGCAATTGTAAACACCC
AGCACCCCTGTGTACTTGTTCATGTTCCATATCTTCAACAAGCTGACACG
ATCACGGG
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