CX046895

Overview
NameCX046895
Unique NameCX046895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3812 contig Csv1_Contig3812:4..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLL_MACFA (DNA polymerase lambda OS=Macaca fascicularis GN=POLL PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 73/216 (33.80%), Postives = 118/216 (54.63%), Query Frame = 1
Query:    1 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            +L+D++++ SLT  Q +GLK+++D   R+PR E  ++E+ +QKA +     ++ +  GSYRRGKA+CGD+DV+I HPD +SH+G  S+ +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     +     L   TEK+VF  LG P+ EP ER+
Sbjct:  359 SLEDIRSQASLTTQQAIGLKHYNDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGWRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKMGPGRVLPTPTEKDVFRLLGLPYREPAERD 574          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLL_HUMAN (DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.242e-29
Identity = 74/216 (34.26%), Postives = 117/216 (54.17%), Query Frame = 1
Query:    1 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            +L+D++++ SLT  Q +GLK++ D   R+PR E  ++E+ +QKA +     ++ +  GSYRRGKA+CGD+DV+I HPD +SH+G  S+ +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     V     L   TEK+VF  LG P+ EP ER+
Sbjct:  359 SLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERD 574          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLL_RAT (DNA polymerase lambda OS=Rattus norvegicus GN=Poll PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.612e-29
Identity = 72/216 (33.33%), Postives = 116/216 (53.70%), Query Frame = 1
Query:    1 TLDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            +L+D++   SLT  Q +GLK++DD   R+PR E  ++E++++ + +   P ++ +  GS+RRGK +CGD+DV+I HPD +SH+G  S  +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     V A   L   TEK+VF  LG P+ EP ER+
Sbjct:  357 SLEDIRGLASLTAQQAIGLKHYDDFLDRMPREEAAEIEQMVRVSAQAFNPGLLCVACGSFRRGKVTCGDVDVLITHPDGRSHQGIFSPLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGAGQRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGAGQVLPTPTEKDVFKLLGLPYREPAERD 572          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLL_MOUSE (DNA polymerase lambda OS=Mus musculus GN=Poll PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.994e-28
Identity = 73/215 (33.95%), Postives = 114/215 (53.02%), Query Frame = 1
Query:    4 LDDLKNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKGFLSKYVKKLKEMKFLREDLIFSTHSEE-----------------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            L+DL++  SLT  Q +GLK++DD   R+PR E  ++E+ ++ + +   P ++ +  GSYRRGK +CGD+DV+I HPD +SH+G  S  +  L++  FL +DL+    + +                       V P   +A  L+ +TG+   NR +R LA++KG  L +  L  A   +     V     L   TEK+VF  LG P+ EP ER+
Sbjct:  358 LEDLQSLGSLTAQQAIGLKHYDDFLDRMPREEAAEIEQTVRISAQAFNPGLLCVACGSYRRGKMTCGDVDVLITHPDGRSHRGIFSCLLDSLRQQGFLTDDLVSQEENGQQQKYLGVCRLPGPGKRHRRLDIIVVPYCEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSAAVVRNSQGVKVGPGQVLPTPTEKDVFKHLGLPYREPAERD 572          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLB_RAT (DNA polymerase beta OS=Rattus norvegicus GN=Polb PE=1 SV=4)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 74/220 (33.64%), Postives = 124/220 (56.36%), Query Frame = 1
Query:    1 TLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            TL+DL KNED L H QR+GLKYF+D + RIPR E+ QM+ ++    +++ PE I    GS+RRG  S GD+DV++ HP+  S        L + V++L++++F+ + L            + S + E  Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+E+++FD++ + + EP +R+
Sbjct:  121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEVKKLDPEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSENDENEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLB_BOVIN (DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 2.192e-26
Identity = 75/220 (34.09%), Postives = 123/220 (55.91%), Query Frame = 1
Query:    1 TLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            TL+DL KNED L H QR+GLKYF+D + RIPR E+ QM+ ++    ++V  E I    GS+RRG  S GD+DV++ HP   S        L + V++L++++F+ + L            + S + E+ Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+EK++FD++ + + EP +R+
Sbjct:  121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLSEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESAKQPKLLHRVVEQLQKVRFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLB_XENLA (DNA polymerase beta OS=Xenopus laevis GN=polb PE=1 SV=3)

HSP 1 Score: 117.857 bits (294), Expect = 6.376e-26
Identity = 73/219 (33.33%), Postives = 118/219 (53.88%), Query Frame = 1
Query:    1 TLDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDLI-----------FSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            TLDDL+N E  L H Q++GLK+FDD + RIPR E+ QM+ ++      + PE I    GS+RRG  S GD+D+++ HPD  S        L + V+ L++  F+ + L+               S++ Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ L++  L P      G  G+ A   L  D+EK++FD++ + + EP +R+
Sbjct:  121 TLDDLRNNEHKLNHHQKIGLKHFDDFEKRIPRKEMLQMQEIILDKVNNLDPEYIATVCGSFRRGAESSGDMDILLTHPDFTSESAKQPRLLHQVVQCLEDCNFITDTLVKGDTKFMGVCQLPCESDQDYPYRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTLRPL-----GVTGI-AGEPLPIDSEKDIFDYIQWKYREPKDRS 333          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLB_HUMAN (DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.423e-25
Identity = 75/220 (34.09%), Postives = 121/220 (55.00%), Query Frame = 1
Query:    1 TLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK----GFLSKYVKKLKEMKFLREDL------------IFSTHSEEVY----------PRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            TL+DL KNED L H QR+GLKYF D + RIPR E+ QM+ ++    ++V  E I    GS+RRG  S GD+DV++ HP   S        L + V++L+++ F+ + L            + S + E+ Y          P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+EK++FD++ + + EP +R+
Sbjct:  121 TLEDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPSFTSESTKQPKLLHQVVEQLQKVHFITDTLSKGETKFMGVCQLPSKNDEKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEKDIFDYIQWKYREPKDRS 334          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLB_MOUSE (DNA polymerase beta OS=Mus musculus GN=Polb PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 73/220 (33.18%), Postives = 122/220 (55.45%), Query Frame = 1
Query:    1 TLDDL-KNEDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHKG----FLSKYVKKLKEMKFLREDL---------IFSTHSEE-------------VYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            TL+DL KNED L H QR+GLKYF+D + RIPR E+ QM+ ++    ++V  E I    GS+RRG  S GD+DV++ HP+  S        L + V++L+++ F+ + L         +    SE+             + P+D Y  G++ +TG+D+ N+ +R  A  KG+ +++  + P      G  GV A   L  D+E+++FD++ + + EP +R+
Sbjct:  121 TLEDLRKNEDKLNHHQRIGLKYFEDFEKRIPREEMLQMQDIVLNEIKKVDSEYIATVCGSFRRGAESSGDMDVLLTHPNFTSESSKQPKLLHRVVEQLQKVHFITDTLSKGETKFMGVCQLPSEKDGKEYPHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRAHALEKGFTINEYTIRPL-----GVTGV-AGEPLPVDSEQDIFDYIQWRYREPKDRS 334          
BLAST of CX046895 vs. ExPASy Swiss-Prot
Match: DPOLB_DANRE (DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 72/221 (32.58%), Postives = 116/221 (52.49%), Query Frame = 1
Query:    4 LDDLKN-EDSLTHSQRLGLKYFDDIKTRIPRHEVEQMERLLQKAGEEVLPEVIILCGGSYRRGKASCGDLDVVIMHPDRKSHK-----------------GFLSKYVKK-----------LKEMKFLREDLIFSTHSEEVYPRDIYAFGLIAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATYGSGGKQGVRARTSLKFDTEKEVFDFLGFPWLEPHERN 579
            L+DLK  E  L H Q++GLKYF++ + RIPR E+++ME L+ K  + V PE I    GSYRRG  S GD+D+++ HPD  S                   GF++  + K            KE +   E+ +       + P+D Y  G++ +TG+D+ N+ +R  A  KG+ L++  + P      G  GV A   L  D+EK++F+++ + + EP +R+
Sbjct:  121 LEDLKKIEHKLNHHQQIGLKYFEEFEKRIPRSEMQKMEALILKELDIVDPEYIGTICGSYRRGAESSGDIDILLTHPDFTSQSEKQPKLLHAVVDHLESIGFITDTLSKGDTKFMGVCQLQKEKEEEEEESLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIRPL-----GVTGV-AGEPLLVDSEKDIFEYIQWKYREPKDRS 335          
The following BLAST results are available for this feature:
BLAST of CX046895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DPOLL_MACFA1.242e-2933.80DNA polymerase lambda OS=Macaca fascicularis GN=PO... [more]
DPOLL_HUMAN1.242e-2934.26DNA polymerase lambda OS=Homo sapiens GN=POLL PE=1... [more]
DPOLL_RAT3.612e-2933.33DNA polymerase lambda OS=Rattus norvegicus GN=Poll... [more]
DPOLL_MOUSE3.994e-2833.95DNA polymerase lambda OS=Mus musculus GN=Poll PE=2... [more]
DPOLB_RAT2.192e-2633.64DNA polymerase beta OS=Rattus norvegicus GN=Polb P... [more]
DPOLB_BOVIN2.192e-2634.09DNA polymerase beta OS=Bos taurus GN=POLB PE=2 SV=... [more]
DPOLB_XENLA6.376e-2633.33DNA polymerase beta OS=Xenopus laevis GN=polb PE=1... [more]
DPOLB_HUMAN2.423e-2534.09DNA polymerase beta OS=Homo sapiens GN=POLB PE=1 S... [more]
DPOLB_MOUSE7.050e-2533.18DNA polymerase beta OS=Mus musculus GN=Polb PE=2 S... [more]
DPOLB_DANRE1.330e-2332.58DNA polymerase beta OS=Danio rerio GN=polb PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10H05_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10H05-P9-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046895 ID=CX046895; Name=CX046895; organism=Citrus sinensis; type=EST; length=765bp
ACACTAGATGATTTGAAGAATGAAGATTCATTAACACATTCTCAGAGATT
AGGTTTGAAATATTTCGATGACATTAAGACGAGGATTCCACGCCATGAGG
TTGAGCAGATGGAACGTCTTCTGCAGAAAGCCGGGGAAGAAGTTTTGCCT
GAGGTGATCATTTTGTGTGGAGGATCATACAGACGTGGAAAGGCTTCCTG
TGGAGATCTAGATGTTGTAATTATGCATCCTGATAGAAAAAGTCATAAGG
GTTTCTTGTCAAAATATGTGAAGAAGTTAAAGGAAATGAAGTTCTTAAGA
GAGGATTTGATTTTCAGCACTCACAGCGAGGAGGTGTATCCAAGGGACAT
ATATGCGTTTGGGCTAATAGCATGGACCGGGAATGATGTACTAAATAGGA
GGTTGAGATTACTAGCAGAATCCAAAGGATACCGACTTGATGATACAGGG
CTGTTTCCAGCTACTTATGGCTCAGGCGGTAAACAGGGTGTAAGGGCGAG
AACAAGTTTGAAATTTGATACTGAAAAGGAGGTGTTTGATTTCCTGGGAT
TTCCTTGGCTAGAACCTCATGAAAGAAATTTGTGAAACATGTGCAGTGTG
TTTAGCAGTAAGATGATGCTGTAGATAGGCACGCATCAAAGGGCAGGCTG
TACTTAGGAGGCTGTCAACAGACATATGTTTGGTACTAATTATACCGTAA
AGTGTGCTGGTGGTCATGGTGACAGGCCTTGCGTTTGATGCTCGACTTAA
GTTATCAGACTTGAT
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