CX046881

Overview
NameCX046881
Unique NameCX046881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 8.805e-53
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDENLLSQIKDGF  GKDLVVSV  AMGEE+I +LKDIGPK
Sbjct:   51 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.805e-53
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTDENLLS IKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   51 GKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.150e-52
Identity = 99/109 (90.83%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LLSQIKDGF  GKDLVVSV  AMGEEQINALKDIGPK
Sbjct:   51 GKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.961e-52
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDENLL Q+KDGF+ GKDLVVSV  AMGEEQINA+KD+G K
Sbjct:   51 GKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.346e-52
Identity = 99/109 (90.83%), Postives = 101/109 (92.66%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+NLL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   51 GKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.370e-52
Identity = 97/109 (88.99%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF+ GKDLVVSV  AMGEEQINA+KDIG K
Sbjct:   51 GKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.735e-52
Identity = 101/124 (81.45%), Postives = 107/124 (86.29%), Query Frame = -1
Query:  300 QKQSCPVYEFC----GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 659
            + ++C V E      GKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDL+LPTD+ LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   36 KNRACKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 2.832e-51
Identity = 95/109 (87.16%), Postives = 103/109 (94.50%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIFNGKKLEDIVPSSHNCD+PHV RT+YQLIDISEDGFVSLLT +GNTKDDLRLPTDE L++QIK+GFESGKDLVV+VQ AMGEEQI ALKD+GPK
Sbjct:   52 GKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRTEYQLIDISEDGFVSLLTSDGNTKDDLRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.831e-51
Identity = 96/109 (88.07%), Postives = 102/109 (93.58%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LL+QIKDGF  GKDLVVSV  AMGEEQI ALKDIGPK
Sbjct:   51 GKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CX046881 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.398e-50
Identity = 94/109 (86.24%), Postives = 99/109 (90.83%), Query Frame = -1
Query:  300 GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 626
            GKHGHAKCHFV IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL+Q+KDGF  GKDLV+SV  AMGEEQI  +KDIGPK
Sbjct:   51 GKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
The following BLAST results are available for this feature:
BLAST of CX046881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
IF5A_MANES8.805e-5391.74Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A3_SOLLC8.805e-5391.74Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLTU1.150e-5290.83Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A2_SOLLC1.961e-5288.99Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A2_NICPL3.346e-5290.83Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A3_SOLTU4.370e-5288.99Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_SENVE9.735e-5281.45Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A_MAIZE2.832e-5187.16Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A2_MEDSA4.831e-5188.07Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A5_SOLTU2.398e-5086.24Eukaryotic translation initiation factor 5A-5 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10G10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10G10-N19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046881 ID=CX046881; Name=CX046881; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGTAAATTGCATGTTTGAAACAACCAAAAGGTGC
TTCGAAGTGTATATACAGTCACGTTGGCGGATACAACTTCTGCACACCGA
GAACAACCATGTTTCAACTTTCAAGCAATCAAACAGAATAAAAATATTGT
CGATAGAAAACAATTAATAATATGGTAAGAGTCATTTTATATGAAATGAT
GACATTCATCTTGAAACCGGACACCAGTAAGCTACACTACTATCCACCTT
CCCACAGCTTTCAGCAATCTGCATTCTCGATCAAGCAAAAAGTCTTTTAC
TTGGGGCCAATGTCCTTCAGGGCATTGATCTGCTCCTCTCCCATAGCACA
CTGAACTGAGACAACCAGATCTTTCCCACTCTCAAATCCATCCTTGATCT
GTGAAAGCAGATTTTCATCAGTTGGAAGTCTCAGGTCATCCTTGGTATTG
CCATTCTCAGTCAGCAGGCTAACAAATCCATCCTCAGAGATATCAATCAG
CTGGTAGTCAGTGCGAGTGACATGAGGAACATCACAGTTGTGGGAAGAGG
GAACAATATCCTCAAGCTTCTTGCCATTGAAGATGTCAATTCCTACAAAG
TGACACTTAGCATGACCGTGCTTTCCGCAGAATTCATAGACAGGGCAGGA
CTGCTTTTGCCTGGACGCCAACAAGAGCTCGTATCCCGAGTTGCCAAGGC
ATCAAGAGGCCCTGTTGTGTTGGTCTTGATGTGTGGCGGCCCTGTTGATG
TATCATTTGCTAAGAATGATCCGAGAATCGGTGCCATTTTGTGGGTTGGT
TATCCTGGGCAGGCT
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