CX046864

Overview
NameCX046864
Unique NameCX046864
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9279 contig Csv1_Contig9279:42..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046864 vs. ExPASy Swiss-Prot
Match: EI24_DICDI (Protein EI24 homolog OS=Dictyostelium discoideum GN=DDB_G0284253 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.547e-17
Identity = 43/148 (29.05%), Postives = 83/148 (56.08%), Query Frame = 1
Query:   28 GVMIVIGEQVYSMLLLSFFFVEVNAIGFLPYIGKGFNFLLLSWMYAYYCFEYKWNF-SEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYGVMAILYPLFVLTATASGAEEVISSKRRSWKGAGFGRLPIFYVADALSMKVL 468
            G++    +++Y  LL     V    I F+PY     NF++++W+Y+++CF+YKW    +  L +R+ +FE++WA+  G+G       FFF  L+   + +ILYPLF++ + ++   ++++       G    ++PIFYV + +   +L
Sbjct:  139 GILSSFVDEIYRNLLFGVILVMSAIIAFIPYTNF-INFVIITWLYSFWCFDYKWILRGKWNLLQRIQYFETHWAYMFGYGLIFTTCSFFFPMLIGNAIFSILYPLFIILSISAKPTKMVNQ-----DGILPKQIPIFYVPEIIVNVIL 280          
BLAST of CX046864 vs. ExPASy Swiss-Prot
Match: EI24_RAT (Etoposide-induced protein 2.4 homolog OS=Rattus norvegicus GN=Ei24 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 32/108 (29.63%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   40 VIGEQVYSMLLLSFFFVEVNAIGFLPY--IGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYG-VMAILYPLFVLTA 354
            +I + ++++LL + F ++   +   P   +G+  + L +S +Y+ YCFEY+W    + + +RL   E NW ++ GFG P        S  +  G + +IL+PLF+++A
Sbjct:  170 IIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISA 277          
BLAST of CX046864 vs. ExPASy Swiss-Prot
Match: EI24_MOUSE (Etoposide-induced protein 2.4 OS=Mus musculus GN=Ei24 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 32/108 (29.63%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   40 VIGEQVYSMLLLSFFFVEVNAIGFLPY--IGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYG-VMAILYPLFVLTA 354
            +I + ++++LL + F ++   +   P   +G+  + L +S +Y+ YCFEY+W    + + +RL   E NW ++ GFG P        S  +  G + +IL+PLF+++A
Sbjct:  170 IIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISA 277          
BLAST of CX046864 vs. ExPASy Swiss-Prot
Match: EI24_HUMAN (Etoposide-induced protein 2.4 homolog OS=Homo sapiens GN=EI24 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 32/108 (29.63%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   40 VIGEQVYSMLLLSFFFVEVNAIGFLPY--IGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYG-VMAILYPLFVLTA 354
            +I + ++++LL + F ++   +   P   +G+  + L +S +Y+ YCFEY+W    + + +RL   E NW ++ GFG P        S  +  G + +IL+PLF+++A
Sbjct:  170 IIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISA 277          
BLAST of CX046864 vs. ExPASy Swiss-Prot
Match: EI24_BOVIN (Etoposide-induced protein 2.4 homolog OS=Bos taurus GN=EI24 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 32/108 (29.63%), Postives = 61/108 (56.48%), Query Frame = 1
Query:   40 VIGEQVYSMLLLSFFFVEVNAIGFLPY--IGKGFNFLLLSWMYAYYCFEYKWNFSEVGLDKRLDFFESNWAFFAGFGSPCVLAYFFFSPLVAYG-VMAILYPLFVLTA 354
            +I + ++++LL + F ++   +   P   +G+  + L +S +Y+ YCFEY+W    + + +RL   E NW ++ GFG P        S  +  G + +IL+PLF+++A
Sbjct:  170 IIADMLFNLLLQALFLLQGMFVSLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYIVSGCLFSILFPLFIISA 277          
The following BLAST results are available for this feature:
BLAST of CX046864 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EI24_DICDI4.547e-1729.05Protein EI24 homolog OS=Dictyostelium discoideum G... [more]
EI24_RAT4.869e-1129.63Etoposide-induced protein 2.4 homolog OS=Rattus no... [more]
EI24_MOUSE4.869e-1129.63Etoposide-induced protein 2.4 OS=Mus musculus GN=E... [more]
EI24_HUMAN4.869e-1129.63Etoposide-induced protein 2.4 homolog OS=Homo sapi... [more]
EI24_BOVIN6.359e-1129.63Etoposide-induced protein 2.4 homolog OS=Bos tauru... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS09_10F12_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F12-L23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046864 ID=CX046864; Name=CX046864; organism=Citrus sinensis; type=EST; length=694bp
CAGAAGGGAAGGCTCCCTGGCCTAGGAGGGGTCATGATTGTAATAGGAGA
GCAAGTGTACTCAATGCTTCTTTTGAGCTTCTTCTTTGTTGAGGTTAATG
CTATCGGATTTCTACCCTACATTGGGAAGGGATTTAATTTCCTTCTTCTT
TCCTGGATGTATGCCTATTACTGTTTCGAGTACAAATGGAATTTTTCGGA
AGTGGGTCTGGACAAGAGGCTGGACTTCTTTGAATCTAACTGGGCCTTTT
TTGCTGGTTTTGGGAGCCCTTGTGTCTTGGCTTATTTCTTCTTCTCACCT
CTGGTAGCCTATGGGGTCATGGCCATACTCTATCCATTGTTTGTTCTTAC
TGCAACGGCATCAGGGGCGGAAGAAGTTATTTCTTCAAAAAGAAGATCAT
GGAAAGGTGCTGGATTTGGGAGACTTCCGATATTTTATGTAGCAGACGCT
CTATCGATGAAGGTCTTGTCTTTCTTCTCCTTCGACTCTCAACAACAGAT
ACAAGACGATAAGGTGCTCTAACAACTTCTGGCTTGAAGCTTACACGATT
TATGATCTGTAAGTCAAGTACATCTCAGGTTTAAATCAAATGCTGCAGAA
ATTCTTCGCATAAAATTTCATGCTGTATCACTTATGCGATACAGATACAT
TGCAAGCTGATGCCATGAGAATTTCTGTAAAAAAAAAAAAAAAA
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