CX046862

Overview
NameCX046862
Unique NameCX046862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4477 contig Csv1_Contig4477:386..1226. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_MANES (Ribulose bisphosphate carboxylase large chain OS=Manihot esculenta GN=rbcL PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.325e-67
Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLR+PPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +C R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRVPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVCAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_HYOLA (Ribulose bisphosphate carboxylase large chain OS=Hyophorbe lagenicaulis GN=rbcL PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.260e-67
Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPP+YSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +C R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPSYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAVCAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_ACOCL (Ribulose bisphosphate carboxylase large chain OS=Acorus calamus GN=rbcL PE=3 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 3.855e-67
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ +   C R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMRRAQCAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_ACOAM (Ribulose bisphosphate carboxylase large chain OS=Acorus americanus GN=rbcL PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.855e-67
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ +   C R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMRRAQCAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_NYMAL (Ribulose bisphosphate carboxylase large chain OS=Nymphaea alba GN=rbcL PE=3 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.121e-66
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGT +++ K  +C R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTSEEMMKRAVCAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_HELNU (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Heliamphora nutans GN=rbcL PE=3 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.121e-66
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   94 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMTKRAVFAR 248
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_BETPA (Ribulose bisphosphate carboxylase large chain OS=Betula papyrifera GN=rbcL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.121e-66
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:  104 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAIFAR 258
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_BETNI (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Betula nigra GN=rbcL PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.121e-66
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   95 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAIFAR 249
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_CAMLE (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Camassia leichtlinii GN=rbcL PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.465e-66
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   95 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMIKRAIFAR 249
[Close]
BLAST of CX046862 vs. ExPASy Swiss-Prot
Match: RBL_BYRCR (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Byrsonima crassifolia GN=rbcL PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.465e-66
Identity = 128/156 (82.05%), Postives = 133/156 (85.26%), Query Frame = 1 
Query:  289 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK-----------RVIR*ECLRGGLDFTKDDENVNSQPFMRWRGPFLFCAEAISKAQAETGEIKGHYLNTTAGTCKKLEKGCLCQR 723
            PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIK           R +  ECLRGGLDFTKDDENVNSQPFMRWR  FLFCAEAI KAQAETGEIKGHYLN TAGTC+++ K  +  R
Sbjct:   94 PLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVY-ECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMMKRAVFAR 248
The following BLAST results are available for this feature:
BLAST of CX046862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBL_MANES1.325e-6782.05Ribulose bisphosphate carboxylase large chain OS=M... [more]
RBL_HYOLA2.260e-6782.05Ribulose bisphosphate carboxylase large chain OS=H... [more]
RBL_ACOCL3.855e-6782.05Ribulose bisphosphate carboxylase large chain OS=A... [more]
RBL_ACOAM3.855e-6782.05Ribulose bisphosphate carboxylase large chain OS=A... [more]
RBL_NYMAL1.121e-6682.05Ribulose bisphosphate carboxylase large chain OS=N... [more]
RBL_HELNU1.121e-6682.05Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_BETPA1.121e-6682.05Ribulose bisphosphate carboxylase large chain OS=B... [more]
RBL_BETNI1.121e-6682.05Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_CAMLE1.465e-6682.05Ribulose bisphosphate carboxylase large chain (Fra... [more]
RBL_BYRCR1.465e-6682.05Ribulose bisphosphate carboxylase large chain (Fra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F11_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F11-L21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046862 ID=CX046862; Name=CX046862; organism=Citrus sinensis; type=EST; length=841bp
GTTTTCTTCTCCTTTTGTGTTCCATAATAAACCTGAACTTGTAGCGCCGT
CAGCCGCACTTGTTGCTCCATCAACTGTGCTGTCAGAAACTGGTTATAGT
TATATCCTCTATCCTCTCTATTTCTAGCCGTTTTGGGTCGGGTTGCCCCT
GAAATTAACAGGGAGGAGAACAACTGCATTACTGGTGGTGGTATCTTCAA
GAAGGATTGGAAAAGCTATTTCTCTAACCAGAACTTTCGGGGTTCCGTAG
AGAGGAGATAGAAATCCATATATGTTATGTAGCTTACCCCTTTAGACCTT
TTTGAAGAAGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAATGT
ATTTGGGTTCAAAGCCCTGCGCGCTCTACGTCTAGAGGATCTACGAATCC
CTCCCGCGTATTCTAAAACTTTCCAAGGCCCGCCTCACGGCATCCAAGTT
GAGAGAGATAAATTGAACAAGTATGGCCGTCCCCTGTTGGGATGTACTAT
TAAACGGGTTATCCGCTAAGAATGTCTACGTGGTGGACTTGACTTTACCA
AAGATGATGAGAACGTGAACTCCCAACCATTTATGCGTTGGAGGGGCCCT
TTCTTATTTTGTGCGGAAGCTATTTCTAAAGCGCAAGCTGAAACAGGTGA
AATCAAAGGTCATTACTTGAATACTACTGCAGGAACATGCAAAAAATTAG
AAAAGGGCTGTCTTTGCCAGAGAGTTCCTTTTGGTTTCTCCGCTAANGCA
TGCCTATAGAAGATCCTTGTGGCTACTCACAANGGGAGTTCGGTTCGACC
ATTGGTTCGTTTAGTAGTAAGTCTCGACAGGGAAACTACAA
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