CX046772

Overview
NameCX046772
Unique NameCX046772
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13757 contig Csv1_Contig13757:22..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_ARATH (Mediator of RNA polymerase II transcription subunit 31 OS=Arabidopsis thaliana GN=At5g19910 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 6.575e-67
Identity = 125/178 (70.22%), Postives = 132/178 (74.16%), Query Frame = 3
Query:  132 GEEASDAPSSPKKVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHILPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGPALSPMQYGIPPGSALMKND 665
            G++AS+ PS PK  YKDPD GRQRFLLELEF+QCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQN NFR AMAHPANKELAHRQQF++WKNYRNNRLKHILPR                                PALSPMQY     + L KND
Sbjct:    8 GDDASEIPSPPKNTYKDPDGGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLKHILPRPLPEPVPPQPPVAPSTSLPPAPSATAAL---SPALSPMQY----NNMLSKND 178          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_DICDI (Putative mediator of RNA polymerase II transcription subunit 31 OS=Dictyostelium discoideum GN=med31 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.641e-33
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 3
Query:  201 RFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRL 491
            RF++ELEF+QCL+NP Y++YLAQNRYF+D+AF+ YL YLQYW++PEY KFI+YP  LYFL+LLQ   FR  + H  + +  H QQF+ W+ YRNNR+
Sbjct:   55 RFIMELEFIQCLSNPRYLNYLAQNRYFQDKAFVNYLVYLQYWKKPEYAKFIVYPQSLYFLDLLQEERFRQELNHSQSTDFIHEQQFYHWQYYRNNRM 151          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_DANRE (Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio GN=med31 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.935e-26
Identity = 52/108 (48.15%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  171 VYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 494
            V +  +  RQRF LELEFVQCLANP Y+++LAQ  Y  ++ F+ YLKYL YW+ PEY KF+ YPHCL+ LELLQ  +FR  + +    +    QQ   W++Y   R +
Sbjct:    4 VMETDEQARQRFQLELEFVQCLANPNYLNFLAQRGYLREKPFVNYLKYLLYWKEPEYAKFLKYPHCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRTR 111          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_BOVIN (Mediator of RNA polymerase II transcription subunit 31 OS=Bos taurus GN=MED31 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  180 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 494
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_MOUSE (Mediator of RNA polymerase II transcription subunit 31 OS=Mus musculus GN=Med31 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  180 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 494
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 114          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_HUMAN (Mediator of RNA polymerase II transcription subunit 31 OS=Homo sapiens GN=MED31 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.311e-26
Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  180 DPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 494
            D    R RF LELEFVQCLANP Y+++LAQ  YF+D+AF+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct:   10 DDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 114          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_XENTR (Mediator of RNA polymerase II transcription subunit 31 OS=Xenopus tropicalis GN=med31 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.140e-25
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  195 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 494
            R RF LELEFVQCLANP Y+++LAQ  YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct:   12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 111          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MD31B_XENLA (Mediator of RNA polymerase II transcription subunit 31-B OS=Xenopus laevis GN=med31-B PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.140e-25
Identity = 50/100 (50.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  195 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 494
            R RF LELEFVQCLANP Y+++LAQ  YF+D++F+ YLKYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct:   13 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKSFVNYLKYLLYWKDPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMR 112          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MED31_DROME (Mediator of RNA polymerase II transcription subunit 31 OS=Drosophila melanogaster GN=MED31 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.650e-25
Identity = 49/102 (48.04%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  195 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLKHI 500
            ++R+ +ELEFVQCL+NP Y+++LAQ  +F+D++FI YLKYLQYW+ P+Y K++MYP CLYFL+LLQ  +FR  + +    +    Q    W++Y   R+K I
Sbjct:   19 KRRWQIELEFVQCLSNPNYLNFLAQRGFFKDQSFINYLKYLQYWKEPDYAKYLMYPMCLYFLDLLQYEHFRREIVNSQCCKFIDDQAILQWQHYTRKRIKLI 120          
BLAST of CX046772 vs. ExPASy Swiss-Prot
Match: MD31A_XENLA (Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus laevis GN=med31-A PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.767e-25
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  195 RQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPANKELAHRQQFFFWKNYRNNRLK 494
            R RF LELEFVQCLANP Y+++LAQ  YF+D+ F+ Y+KYL YW+ PEY K++ YP CL+ LELLQ  +FR  + +    +    QQ   W++Y   R++
Sbjct:   12 RIRFQLELEFVQCLANPNYLNFLAQRGYFKDKPFVNYMKYLLYWKEPEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRVR 111          
The following BLAST results are available for this feature:
BLAST of CX046772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MED31_ARATH6.575e-6770.22Mediator of RNA polymerase II transcription subuni... [more]
MED31_DICDI3.641e-3359.79Putative mediator of RNA polymerase II transcripti... [more]
MED31_DANRE1.935e-2648.15Mediator of RNA polymerase II transcription subuni... [more]
MED31_BOVIN2.528e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_MOUSE3.301e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_HUMAN4.311e-2649.52Mediator of RNA polymerase II transcription subuni... [more]
MED31_XENTR2.140e-2550.00Mediator of RNA polymerase II transcription subuni... [more]
MD31B_XENLA2.140e-2550.00Mediator of RNA polymerase II transcription subuni... [more]
MED31_DROME3.650e-2548.04Mediator of RNA polymerase II transcription subuni... [more]
MD31A_XENLA4.767e-2549.00Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10B02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10B02-D3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046772 ID=CX046772; Name=CX046772; organism=Citrus sinensis; type=EST; length=843bp
CGCCTCTCTGTTTCACAATTAAAAGCTTCCTGCAAACTGCTATTTCTGTT
AATCTTCCAATTGATATAATTTGTTAAAATTAATTTTCAATTTGTAAAAA
GTGATAAAATAAGATGGCCGCTGCCAAGGACGGTGAAGAAGCATCCGATG
CCCCATCCTCGCCAAAGAAGGTGTATAAAGATCCAGACGACGGGAGACAA
CGCTTTTTGCTTGAACTGGAATTCGTTCAATGTCTTGCTAATCCCACTTA
CATTCACTATTTGGCTCAGAATCGCTATTTTGAAGACGAGGCTTTCATTG
GTTACTTGAAATATCTTCAGTACTGGCAACGGCCGGAGTACATTAAATTT
ATAATGTATCCACATTGCCTCTATTTTCTTGAACTTCTACAAAATGCAAA
CTTCCGCAATGCTATGGCACATCCTGCCAACAAGGAGTTGGCACATAGGC
AGCAATTCTTTTTCTGGAAGAACTATAGAAACAATCGACTAAAGCACATT
TTACCAAGGCCTCTTCCTGAACCTGCTGAGGCTCCACCACCTGCTGCTGC
TCCACCTCTGCCACCTGCACCACCTGTGCCGACTCCTGTGACAGCTGCTT
CAGGGCCAGCCCTTTCTCCTATGCAGTATGGAATTCCCCCAGGATCAGCT
CTGATGAAAAATGATATGAGGAGTAGCAGCATTGATCGAAGAAAAAGGAA
GAAAGATGGTTGAATTGGCATAACATTCCTGTGCCTTAAACTTATGAGGT
AATCTTTTTTATTCCAATCAGTTTATGTGATTTGAAGAGGGAATAGCTGA
ATAGTCATTTATTCTATATGTATAGATTTTGAAATTGTTCTTG
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