CX046699

Overview
NameCX046699
Unique NameCX046699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10176 contig Csv1_Contig10176:216..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX046699 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 51/142 (35.92%), Postives = 74/142 (52.11%), Query Frame = -3 
Query:  311 TNGQCPLDVIQLSSPSERGDNLRLLPYDNYK-IVKVSPDVNLRFPVKVSVKPCNEEPLWKVDSYDDPL----IVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGDHE 721
            T   CP  V+Q  S  + G  +     D+   +V+VS DVN+ F V +  + C+   +W++D+YD+      + T G +G PG  TL +WFKIEKAG       Y    CPSVC SC   C+ IG  + D  +  L + D+E
Sbjct:   65 TGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEF-VPIRDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVLG----YKFRFCPSVCDSCTTLCSDIGRHSDDDGQIRLALSDNE 201
[Close]
BLAST of CX046699 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = -3 
Query:  317 CPLDVIQLSSPSERGDNLRLLPYDNYK--IVKVSPDVNLRFPVKVSVKPCN--EEPLWKVDSYDDP----LIVTGGSEGHPGAETLLNWFKIEKAGNFSYGGVYNIVHCPSVCLSCPRRCNKIGVSTKDGVRRLLLVGD 709
            CP  V+Q     +    L   P +N K  +V+VS D+N+ F    +  PC      +W++D YD+      +  GG +G+PG ET+ +WFKIE+   F   G Y +V CP+VC SC  +C  +G+      RR L + D
Sbjct:   76 CPPRVVQTRKEVDHDRPLAFFP-ENPKEDVVRVSTDLNINFS---AFMPCRWTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEE---FCGSGFYKLVFCPTVCGSCKVKCGDVGIYIDQKGRRRLALSD 207
The following BLAST results are available for this feature:
BLAST of CX046699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASP_THECC1.200e-1535.9221 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU5.957e-1534.53Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_9F11_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9F11-L21-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046699 ID=CX046699; Name=CX046699; organism=Citrus sinensis; type=EST; length=726bp
TTTTTTTTTTTTTTTTTAAAACATTGACAAAGCACTGATAATACGTATGC
ATGGAGACTTAAAAGATGTATACATAACATGAGTAAAGATTAACAACAGC
AAAAGGATCACAGGCGGTGTTATTTTTATTCTGTAATAAAGATAAAAGGT
TACTAGCCTGGTCTATTATTTAAAATGATACAGCTAAGTTCATTCATTAC
GCGGTCATTGATATTGCTTCAGCAGCTTCAAAAAACCTTGATATTGCGTT
AGCAGCTTGAAGTAGCCTTGAGCTTTCCTCTGATGGAAAAAACAGAACAT
TCAAAGCCGGTTCATGATCACCAACTAAAAGCAAACGTCGAACGCCATCC
TTAGTTGAAACGCCAATTTTGTTGCAGCGTCTAGGACAAGATAGACAGAC
ACTCGGACAATGGACAATATTGTATACACCACCATATGAAAAATTTCCAG
CTTTCTCAATCTTAAACCAATTTAGCAACGTTTCAGCTCCTGGGTGGCCC
TCACTTCCGCCGGTTACAATTAAGGGATCGTCATAGCTATCAACTTTCCA
CAAGGGTTCTTCATTACAGGGCTTAACAGAAACTTTTACGGGGAATCTCA
GGTTGACATCAGGGGATACCTTGACAATTTTGTAATTGTCGTACGGAAGT
AATCTTAAATTATCTCCCCTTTCGCTAGGAGAACTTAATTGGATAACGTC
CAAGGGACACTGTCCATTTGTGCCTA
back to top