CX046658

Overview
NameCX046658
Unique NameCX046658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6148 contig Csv1_Contig6148:419..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046658 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.785e-59
Identity = 112/199 (56.28%), Postives = 136/199 (68.34%), Query Frame = -2
Query:  228 LPENVXANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 824
            LPEN  AN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +FDGD EDFR +LKDPS API+LD VE+I A+
Sbjct:  130 LPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX046658 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.185e-58
Identity = 111/199 (55.78%), Postives = 135/199 (67.84%), Query Frame = -2
Query:  228 LPENVXANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSHDSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELDEVEFIPAA 824
            LPEN  AN++ VA+MGHSRGG  AF L+L Y           A++G+DPVAG +   + L+P ILS DSF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDILDDNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +F GD EDFR +LKDPS API+LD VE+I A+
Sbjct:  130 LPENTEANVSLVAVMGHSRGGQTAFALSLRYG--------FGAVIGLDPVAGTSKT-TGLDPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAEDFRQILKDPSFAPIKLDSVEYIDAS 319          
BLAST of CX046658 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.448e-34
Identity = 85/194 (43.81%), Postives = 117/194 (60.31%), Query Frame = -2
Query:  252 LPENVXANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIP-XXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIELD 824
            LP +V AN  Y +L+GHSRGG  AF +ALG+A     SI  SAL+GIDPVAG  + +   +P IL++  +SFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+LDD+  G   + ++  +C NG++ +  MR  V GI  AFLK    G+  + R ++KDPS++P +LD
Sbjct:  121 LPTSVNANGKYTSLVGHSRGGKTAFAVALGHAATLDPSITFSALIGIDPVAG-TNKYIRTDPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAEIRLIVKDPSVSPAKLD 311          
BLAST of CX046658 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.698e-28
Identity = 84/206 (40.78%), Postives = 113/206 (54.85%), Query Frame = -2
Query:  237 LPENVXANLNYVALMGHSRGGLIAFGLAL---GYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFS---IPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKD--PSLAPIELDEVEFI 824
            LP  V  NL+  AL GHSRGG  AF +AL   GY++N    +KIS L+GIDPV G      +  PP+L++  +SF+     I                 PCAP   NH +FF+ C      HF AKDYGH+D+LDD+ +G +  + S  LC NG++ R PMRR V G+  +FLKAY +GD  +    +KD      P+E+ E E I
Sbjct:  121 LPAQVTPNLSKFALSGHSRGGKTAFAVALKKFGYSSN----LKISTLIGIDPVDGTGK-GKQTPPPVLAYLPNSFDLDKTPILVIGSGLGETARNPLFPPCAPPGVNHREFFRECQ-GPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEE-RRPMRRFVGGLVVSFLKAYLEGDDREL-VKIKDGCHEDVPVEIQEFEVI 317          
BLAST of CX046658 vs. ExPASy Swiss-Prot
Match: CLH0_CHEAL (Chlorophyllase type 0 OS=Chenopodium album GN=CACLH PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.150e-23
Identity = 71/188 (37.77%), Postives = 102/188 (54.26%), Query Frame = -2
Query:  255 VXANLNYVALMGHSRGGLIAFGLALGYATNPPVSIKISALVGIDPVAGLASVHSELEPPILSH--DSFEFSIPXXXXXXXXXXXTKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILDDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDCEDFRTMLKDPSLAPIEL 812
            V  +L  +A+ GHSRGG  AF LALG++ N  + +  SAL+G+DPVAG  SV     P +L++  +SF  SIP           T     CAP + +H+QF+  C   + +HF    YGHMD+L++    P    +S  +C    +P+  MRR + GI  AFL AYF  D   +  ++ + SLAP  L
Sbjct:  149 VEGDLEKLAISGHSRGGKSAFALALGFS-NIKLDVTFSALIGVDPVAG-RSVDDRTLPHVLTYKPNSFNLSIPVTVIGSGLGNHTIS---CAPNHVSHQQFYDECK-ENSSHFVITKYGHMDMLNEFRLSPIAVTMS-LMCAQSFRPKATMRRTLGGIMVAFLNAYFRDDGRQYYAIIANRSLAPTNL 329          
The following BLAST results are available for this feature:
BLAST of CX046658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CLH1_CITUN3.785e-5956.28Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI4.185e-5855.78Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH1_ARATH1.448e-3443.81Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
CLH2_ARATH7.698e-2840.78Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH0_CHEAL1.150e-2337.77Chlorophyllase type 0 OS=Chenopodium album GN=CACL... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_9D07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9D07-H13-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046658 ID=CX046658; Name=CX046658; organism=Citrus sinensis; type=EST; length=828bp
ACTAGTTTATTTTGAATGTAGAAGAAACTGCTGACAAAGAAACCAAATAC
AGTAATAAACAACATGATCATTACTTAAAAGGTCATCCTAAGCAAGGCTC
ATTATGTCCCGTTATTATATATTATTTAGTTTTTCTAAGCTTTCCCTCAT
TTCTGAGAAGTTTACCGCCCAAAATGGAAAGTGCATATGAGCCAAATGGG
TAGGTGCAGTGGTTAAGCTTTTGCACGAGCTGCGGGAATGAACTCAACCT
CATCAAGCTCTATCGGAGCAAGAGAAGGGTCTTTCAACATTGTCCTGAAA
TCCTCACAATCACCATCAAAATAGGCCTTCAAAAAAGCCGCAGCAATGCC
AGCAACACATCTCCTCATGGGATCCCTTGGTTTCTTTCCATTCGTGCACA
AAAATTTTGAAATTGCCCAATTCTTTGGTCCCTGGGGATTATCATCTAAA
ATGTCCATGTGACCATAATCCTTAGCATCAAAATGAGCATGATCTGAATA
TGTACACCTCTTGAAAAATTGCTCATGGTTTTTGTTTTCCGGTGCACAAG
GCTGCATGCACTTTGTCACACCACCGAGTCCGGTGCCAATTACAGTAACA
GGAATTGAGAACTCGAATGAGTCATGACTGAGAATCGGGGGTTCAAGTTC
ACTATGAACGCTGGCTAACCCGGCAACTGGGTCTATGCCTACTAATGCTG
AAATTTTAATGCTAACTGGAGGATTTGTTGCATAGCCAAGTGCCAGACCG
AACGCTATTAGTCCTCCGCGACTGTGTCCCATAAGAGCAACGTAGTTTAG
GTTAGCTTNCACATTTTCCGGGAGTTCT
back to top