CX046625

Overview
NameCX046625
Unique NameCX046625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3792 contig Csv1_Contig3792:1..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046625 vs. ExPASy Swiss-Prot
Match: U326_ARATH (UPF0326 protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.641e-21
Identity = 40/64 (62.50%), Postives = 56/64 (87.50%), Query Frame = -3 
Query:  585 FMERQSAHYNGDTYHLIVKNCNHFCKDICYKLTGKPIPKWVNRLAKIGSVCNCVLPEALKISAV 776
            +ME+ S  Y+GDTYHLI KNCNHF +++C +LTGKPIP W+NRLA++GS CNC+LPE+++++AV
Sbjct:  105 YMEKLSRKYHGDTYHLIAKNCNHFTEEVCLQLTGKPIPGWINRLARVGSFCNCLLPESIQLTAV 168
The following BLAST results are available for this feature:
BLAST of CX046625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U326_ARATH1.641e-2162.50UPF0326 protein At4g17486 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_9C01_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9C01-F1-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046625 ID=CX046625; Name=CX046625; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTGTACAAATTGATGAACATCTTCCAGTAGCATAA
AATAAATGAGACATTACAGTACTACTTGAAGGATACAGAATTTCTACAGA
CAAATCTATTTGCTAAGAACAAATGATATCAGAATATTTGAGTCATAGGA
ACATATCTTCAAGATGGCAATTAGTTGATCTACCTTAATTCACAATAGTT
TCTGACAGCAGAAGCATAGATGGCAAGCATCATTCAAACTTGCTAAACCA
AGAATACTCGAGCGATGGCATCACATTTTGGCATACGTAAAGAACAGATT
TAAAGAAAATCTCTTCATCAAGCTTATGCAGCTCAGTCTCCACATTAAAA
GACTGCATGGATGCTAAAGAAATCCTCTAAGCAGTTGTCTCACCTTTCCT
TCAATGAACCATTGTTTGACCTTCTCAATTCCCATGATGGTAGGCAGCCT
TTCAAGGGTGATTGTAGAAGCAGGGAGGACGTAGACAACTGTTTTTGCCG
CATTGAGATTGATGACAAGCAACTAAATGCACTTCTTAGCCTCCTTTTAT
CACTATCAATTGGCTGGTAATTAGGATCATGCCGCACAGCGGAAATCTTC
AGGGCTTCAGGAAGCACGCAGTTGCAGACTGAACCTATTTTTGCCAGTCG
ATTCACCCATTTTGGAATTGGCTTCCCGGTTAGCTTATAACAAATGTCCT
TGCAGAAATGATTGCAATTCTTAACAATCAAGTGATATGTATCACCATTA
TAGTGTGCAGATTGTCTCTCCATGAACT
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