CX046624

Overview
NameCX046624
Unique NameCX046624
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 101/123 (82.11%), Postives = 109/123 (88.62%), Query Frame = -1
Query:  446 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLI-APPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHAEPSDPEPMIES 811
            SSLD HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE+QL++SRYG +  A   RRKE++ QLAKITRDSAKITVEQVHGLMSQVIKDILFNS RQS K+  + SDPEPMI S
Sbjct:  235 SSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESQLANSRYGGIAPAGHQRRKEDEPQLAKITRDSAKITVEQVHGLMSQVIKDILFNSARQSKKSADDSSDPEPMITS 357          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.352e-44
Identity = 93/122 (76.23%), Postives = 106/122 (86.89%), Query Frame = -1
Query:  452 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLI-APPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS-TKTHAEPSDPEPMI 811
            SSLD HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAE+ L  SR+G ++ +   ++KE++SQL KITRDSAKITVEQVHGLMSQVIKD LFNS+RQS  K+  + SDP+PMI
Sbjct:  235 SSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAESHLVQSRFGGVVPSSLHKKKEDESQLTKITRDSAKITVEQVHGLMSQVIKDELFNSMRQSNNKSPTDSSDPDPMI 356          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.028e-29
Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = -1
Query:  488 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTK 811
            SSLD  LLD LWNKYWVNTLSSSP+  N DY+ GQI+DL+EKLEQAE QLSHSR   L      +K+E+S L+K+++DS+K+T+EQV G+MSQV K+ +FN   Q+TK
Sbjct:  230 SSLDQQLLDKLWNKYWVNTLSSSPIFSNRDYITGQINDLSEKLEQAETQLSHSRSSIL-----DKKKEESLLSKVSKDSSKVTIEQVQGIMSQVFKNSIFNEC-QTTK 331          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 63/106 (59.43%), Postives = 75/106 (70.75%), Query Frame = -1
Query:  494 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS 811
            SSLD  LL+LLWNKYWVNTLSSS LL N DY  GQ+ DL+EKLEQAE QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN V  S
Sbjct:  229 SSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQAEAQLGRGSF--MLGLDTHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQVNTS 332          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 119.398 bits (298), Expect = 2.399e-26
Identity = 61/106 (57.55%), Postives = 75/106 (70.75%), Query Frame = -1
Query:  494 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQS 811
            SSLD  LL+LLWNKYWVNTLSSS LL N DY  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN +  S
Sbjct:  231 SSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINIS 334          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.133e-26
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = -1
Query:  503 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV 811
            SSLD  LL+LLWNKYWVNTLSSS LL N DY  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN +
Sbjct:  231 SSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQI 331          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 3.133e-26
Identity = 60/103 (58.25%), Postives = 74/103 (71.84%), Query Frame = -1
Query:  503 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV 811
            SSLD  LL+LLWNKYWVNTLSSS LL N DY  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN +
Sbjct:  231 SSLDRKLLELLWNKYWVNTLSSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQI 331          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.116e-26
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = -1
Query:  503 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV 811
            SSLD  LL+LLWNKYWVNTLSSS LL N +Y  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN +
Sbjct:  229 SSLDRKLLELLWNKYWVNTLSSSSLLTNAEYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLESHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQI 329          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.585e-22
Identity = 54/103 (52.43%), Postives = 68/103 (66.02%), Query Frame = -1
Query:  503 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSV 811
            S+LD  LLD LWNKYWVNTL SS LL N +Y  GQI DL+EKLEQ+EN L               K  + +L+K TRD ++ T+E +HGLM+Q++KD LFN V
Sbjct:  228 SALDRRLLDSLWNKYWVNTLGSSGLLTNTEYTTGQIMDLSEKLEQSENFLGR-------GTDVNEKRSEDKLSKATRDCSRSTIELIHGLMAQIVKDKLFNKV 323          
BLAST of CX046624 vs. ExPASy Swiss-Prot
Match: CSN5_ASPFU (COP9 signalosome complex subunit 5 OS=Aspergillus fumigatus GN=csn5 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  479 SSLDCHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAEN--QLSHSRYGPLIAPPPRRKEEDSQLAKITRDSAKITVEQVHGLMSQVIKDILFNSVRQSTKTHA 811
            SSLD  LL  LWNKYWV TLS SPL    DY + Q+ DL++K+ +A    + S SR G   A  P+    D QL KI RD  +I  E+V GL++  +K  LF  + + T+T A
Sbjct:  228 SSLDTELLSQLWNKYWVATLSQSPLFTTRDYGSRQMMDLSQKVRRAARGIESSGSRGG---ATTPK----DQQLEKIVRDGQRIVSEEVKGLLAAEVKMKLFQGIGEGTQTGA 333          
The following BLAST results are available for this feature:
BLAST of CX046624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CSN5B_ARATH1.001e-4882.11COP9 signalosome complex subunit 5b OS=Arabidopsis... [more]
CSN5A_ARATH4.352e-4476.23COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5_DICDI3.028e-2961.11COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_DANRE4.834e-2759.43COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]
CSN5_HUMAN2.399e-2657.55COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_XENTR3.133e-2658.25COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_MOUSE3.133e-2658.25COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_XENLA9.116e-2657.28COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_DROME3.585e-2252.43COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_ASPFU9.456e-1544.25COP9 signalosome complex subunit 5 OS=Aspergillus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B12-D23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046624 ID=CX046624; Name=CX046624; organism=Citrus sinensis; type=EST; length=811bp
GTTCATTTAGGCTAAAGATGAGATCAAACCAAGTCCTCCTGAGTGACAGT
TTTGAGTCGGATGCCCAAAGAATTTACAATTCTTCCTTGATTCGTATTTG
ATTTGGACAGACAATAAAATAAACCAGGCACTCGACAACCATTGTCCTTA
GGTTTCATATCTAAATAATATTACGGGGCAAATATGGGGTCTCTAATGAC
GATTAACGTTGTCTAATTTTCCAACTTACAAATACCAAATAGTGCAAAAA
CTGGAATTCCGTAATAGATCCACTATGAATGCAACAAGGATTTACATTAG
GGCAGAAGGTAACAAAACTTTGGCAGTCTCAGCCTGAGATTCGTTGTAAT
GAATTTTGAAATAAAAATCTTGGTCTGGCAGGTGAAGGGAGCATGGAAGG
CAAAGGCTTCTACTTTCTTGCTGCACCATTAAGTTGCAAAAATCAGGATT
CAATCATAGGTTCAGGGTCAGATGGCTCAGCGTGAGTCTTGGTGGATTGT
CGAACAGAATTGAAAAGGATGTCTTTGATAACCTGTGACATTAGACCATG
AACCTGCTCAACAGTTATCTTCGCACTGTCACGAGTGATCTTAGCAAGCT
GTGAATCCTCCTCCTTCCTTCTTGGAGGGGGTGCTATTAAGGGCCCATAG
CGAGAGTGAGACAATTGATTCTCAGCTTGCTCCAGCTTTTCAGCTAAATC
CGAAATTTGTCCTGCAACATAGTCCCCATTACCAAGCAAAGGCGAAGATG
AAAGAGTATTCACCCAGTACTTGTTCCACAGCAGATCCAAAAGATGGCAA
TCAAGAGAGGA
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