EY662379

Overview
NameEY662379
Unique NameEY662379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2210 contig Csv1_Contig2210:64..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662379 vs. ExPASy Swiss-Prot
Match: PSBW_SPIOL (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea GN=psbW PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 69/124 (55.65%), Postives = 77/124 (62.10%), Query Frame = 1
Query:   49 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKGKVRCSMEEKPSKQESKT--NVGXXXXXXXXXXXXXXXXXXXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPYA 414
            MA ITAS   S + R+ LVH   +  SSSP+LGLP+M  + KV CS+E KPS  E+ T  N                      LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIWALY  YA
Sbjct:    1 MATITASSSASLVARASLVHNSRVGVSSSPILGLPSMTKRSKVTCSIENKPSTTETTTTTNKSMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYA 124          
BLAST of EY662379 vs. ExPASy Swiss-Prot
Match: PSBW_ARATH (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana GN=PSBW PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 66/123 (53.66%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   49 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVK-GKVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXX-LVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 411
            MA+ TAS  T S  R  L+ KP+ VA S+PVLGLP M  K G VRCSME   +KQ + + +G                     LVDERMSTEGTGLPFGLSNNLLGWIL GVFGLIW  +  Y
Sbjct:    1 MASFTASASTVSAARPALLLKPT-VAISAPVLGLPPMGKKKGGVRCSME---TKQGNVSVMGAGVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 119          
BLAST of EY662379 vs. ExPASy Swiss-Prot
Match: PSBW_ORYSJ (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSBW PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.164e-15
Identity = 53/123 (43.09%), Postives = 64/123 (52.03%), Query Frame = 1
Query:   49 MAAITASVGTSSITRSVLVHKPSIVASSSPVLGLPAMAVKG--KVRCSMEEKPSKQESKTNVGXXXXXXXXXXXXXXXXXXXXLVDERMSTEGTGLPFGLSNNLLGWILLGVFGLIWALYIPY 411
            MA ++A+  TS + R+VL             LGLP M  +   +VRC+     SK+ +                         LVDERMSTEGTGL  GLSNNLLGWILLGVFGLIW+LY  Y
Sbjct:    1 MATVSAAAATSVVARAVLAGP----------LGLPQMRARRSERVRCNY----SKEAATPAAAVKGAGASLLAMAATAAPAMALVDERMSTEGTGLSLGLSNNLLGWILLGVFGLIWSLYTIY 109          
The following BLAST results are available for this feature:
BLAST of EY662379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSBW_SPIOL4.120e-2955.65Photosystem II reaction center W protein, chloropl... [more]
PSBW_ARATH1.677e-2253.66Photosystem II reaction center W protein, chloropl... [more]
PSBW_ORYSJ1.164e-1543.09Photosystem II reaction center W protein, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-043-E04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662379 ID=EY662379; Name=EY662379; organism=Citrus sinensis; type=EST; length=545bp
CCACGCGTCCGATTCTTCACTCCATCTCGTCTTCCAACTCCAAGAAAAAT
GGCCGCCATCACTGCTAGCGTAGGAACATCATCGATTACACGCTCGGTTC
TTGTGCACAAGCCATCCATTGTAGCTTCATCATCCCCTGTTCTTGGATTG
CCAGCAATGGCAGTGAAGGGGAAAGTGAGATGTTCGATGGAGGAAAAGCC
TTCAAAGCAAGAGAGCAAAACAAACGTGGGAATGAGTGCGTCACTGCTAG
CAGCAGCATGCGCAGCAACAATGTCAAGCCCAGCCATGGCTCTTGTTGAT
GAGAGAATGAGCACTGAAGGAACAGGGCTTCCATTTGGTTTGAGCAACAA
CCTCCTTGGGTGGATTCTGTTGGGTGTTTTTGGTCTCATCTGGGCCCTCT
ACATTCCTTACGCTTCCAGTCTTGATGAAGATGAAGAGTCCGGATTGTCC
CTCTGATAGTCTGAAGTCTAAAGCCAAACCCCCTGTTGGTAGAAATGTAA
AGAGTTTGGCCTTTTCCCTTAATTTGTTTTAGTAAAATCTATCTT
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