CX046616

Overview
NameCX046616
Unique NameCX046616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12481 contig Csv1_Contig12481:114..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_MEDTR (Eukaryotic translation initiation factor 3 subunit C OS=Medicago truncatula GN=TIF3C1 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 2.055e-77
Identity = 139/170 (81.76%), Postives = 154/170 (90.59%), Query Frame = -1
Query:    1 RGPSAFISVPELVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 510
            R P+ F+   ELV RKPTFPENSRT+MD+LVSLIYKYGDERTKARAMLCDIYHHALLDEF+ ARDLLLMSHLQ+NV  MD+ +QILFNRAM+QLGLCAFR G+ +E H CLSELYSGG+VKELLAQG+SQSRYHEKTPEQERLERRRQMPYHMHINLELLE+VHL  A+L
Sbjct:  474 RIPAPFVVTLELVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFAVARDLLLMSHLQENVHHMDISTQILFNRAMSQLGLCAFRAGLVSEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLTSAML 643          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_ARATH (Eukaryotic translation initiation factor 3 subunit C OS=Arabidopsis thaliana GN=TIF3C1 PE=1 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 5.980e-77
Identity = 137/168 (81.55%), Postives = 153/168 (91.07%), Query Frame = -1
Query:    1 PSAFISVPELVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 504
            P++FI VPE+VPRKPTFPE+SR MMD+LVSLIY+ GDERTKARAMLCDI HHAL+D F TARDLLLMSHLQDN+Q MD+ +QILFNR MAQLGLCAFR GM  E HSCLSELYSG +V+ELLAQG+SQSRYHEKTPEQER+ERRRQMPYHMH+NLELLEAVHL CA+L
Sbjct:  456 PTSFIVVPEVVPRKPTFPESSRAMMDILVSLIYRNGDERTKARAMLCDINHHALMDNFVTARDLLLMSHLQDNIQHMDISTQILFNRTMAQLGLCAFRAGMITESHSCLSELYSGQRVRELLAQGVSQSRYHEKTPEQERMERRRQMPYHMHLNLELLEAVHLICAML 623          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_BOTFB (Eukaryotic translation initiation factor 3 subunit C OS=Botryotinia fuckeliana (strain B05.10) GN=nip1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.065e-41
Identity = 81/152 (53.29%), Postives = 113/152 (74.34%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY--KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            E+++T++++L + +Y    G+  TKARAMLC IY  AL D +  ARD++LMSHLQ+ +   DV SQILFNR + Q+GLCAFR G+  E  + L E+   G+ KELLAQG+   RY++ TP+QERLE++RQ+P+HMHINLELLE V+L C++L
Sbjct:  475 EDAKTLVNVLCNYLYINTEGEGLTKARAMLCQIYFEALHDNYYKARDMMLMSHLQETINSFDVHSQILFNRTLVQVGLCAFRAGLVYEAQTTLQEICGSGRQKELLAQGVMIQRYNQVTPDQERLEKQRQLPFHMHINLELLECVYLTCSML 626          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_SCLS1 (Eukaryotic translation initiation factor 3 subunit C OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=nip1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.373e-41
Identity = 80/152 (52.63%), Postives = 113/152 (74.34%), Query Frame = -1
Query:    1 ENSRTMMDMLVSLIY--KYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 450
            ++++T++++L + +Y    G+  TKARAMLC IY  AL D +  ARD++LMSHLQ+ +   DV SQILFNR + Q+GLCAFR G+  E  + L E+   G+ KELLAQG+   RY++ TP+QERLE++RQ+P+HMHINLELLE V+L C++L
Sbjct:  476 QDAKTLVNILCNYLYINTEGEGLTKARAMLCQIYFEALHDNYYKARDMMLMSHLQETINSFDVHSQILFNRTLVQVGLCAFRAGLVYEAQTTLQEICGSGRQKELLAQGVMIQRYNQVTPDQERLEKQRQLPFHMHINLELLECVYLTCSML 627          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROSE (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila sechellia GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.427e-40
Identity = 86/166 (51.81%), Postives = 112/166 (67.47%), Query Frame = -1
Query:    1 PELVPRK----PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE++ +K    P     S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR G   + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  493 PEVLKKKRGELPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQGNVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 658          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROME (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila melanogaster GN=eIF3-S8 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.427e-40
Identity = 86/166 (51.81%), Postives = 112/166 (67.47%), Query Frame = -1
Query:    1 PELVPRK----PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE++ +K    P     S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR G   + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  493 PEVLKKKRGELPATTSTSVDVMDKLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQGNVKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 658          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_BOMMO (Eukaryotic translation initiation factor 3 subunit C OS=Bombyx mori GN=eIF3-S8 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.476e-40
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = -1
Query:    1 PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 462
            P   E +   M+     IY + + +R + RA+L  IYHHAL D +  ARDLLLMSHLQ+ VQ  D  +QIL+NR MA LGLCAFR G   E H CL+EL   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  497 PPTEETTIKKMERYCKYIYAHDETDRLRTRAILSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKEAHGCLAELMMTGKPKELLAQGLLPQRQHERSKEQEKIEKQRQMPFHMHINLELLECVYLVSAML 651          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROAN (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila ananassae GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.971e-40
Identity = 86/166 (51.81%), Postives = 115/166 (69.28%), Query Frame = -1
Query:    1 PELVPRKP-TFPENSRT---MMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE++ +K    P+N++T   +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  495 PEVLKKKRGEIPQNTQTSVDVMDRLCKFIYAKDDTDRIRTRAILAHIYHHAMHDNWFQARDLVLMSHLQDNIDAADPATRILYNRMMANLGLCAFRQENIKDAHHCLVDLMVTGKPKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 660          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_DROWI (Eukaryotic translation initiation factor 3 subunit C OS=Drosophila willistoni GN=eIF3-S8 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.221e-39
Identity = 85/166 (51.20%), Postives = 111/166 (66.87%), Query Frame = -1
Query:    1 PELVPRK----PTFPENSRTMMDMLVSLIYKYGD-ERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 483
            PE+  +K    P   + S  +MD L   IY   D +R + RA+L  IYHHA+ D +  ARDL+LMSHLQDN+   D  ++IL+NR MA LGLCAFR     + H CL +L   GK KELLAQG+   R HE++ EQE++E++RQMP+HMHINLELLE V+L  A+L
Sbjct:  494 PEVFKKKRGDIPNTTQTSVDIMDRLCKFIYAKDDTDRIRTRAILTHIYHHAMHDNWFQARDLILMSHLQDNIDAADPSTRILYNRMMANLGLCAFRQENVKDAHHCLVDLMVTGKAKELLAQGLLPQRQHERSAEQEKIEKQRQMPFHMHINLELLECVYLVSAML 659          
BLAST of CX046616 vs. ExPASy Swiss-Prot
Match: EIF3C_PHANO (Eukaryotic translation initiation factor 3 subunit C OS=Phaeosphaeria nodorum GN=NIP1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.901e-39
Identity = 78/160 (48.75%), Postives = 112/160 (70.00%), Query Frame = -1
Query:    1 ELVPRKPTFPENSRTMMDMLVSLIYKYGDERTKARAMLCDIYHHALLDEFSTARDLLLMSHLQDNVQQMDVLSQILFNRAMAQLGLCAFRVGMNAEGHSCLSELYSGGKVKELLAQGISQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLNCAIL 480
            E+ PR      ++ +++  L + +++  +   +ARAMLC IY  AL D++  ARD++LMSHLQ+ +   DV +QILFNRA+ Q+GLCAFR G+  E  + L E+    + KELLAQG+   RY + +PEQERLER+RQ+P+HMHINLELLE V+L C++L
Sbjct:  461 EVTPR--AISNDTTSLVQTLSTYLFQNSEGIIRARAMLCQIYFLALHDQYYKARDMMLMSHLQETISNFDVNTQILFNRALVQVGLCAFRAGLVYESQNSLQEICGSNRQKELLAQGLQMQRYSQISPEQERLERQRQLPFHMHINLELLECVYLTCSML 618          
The following BLAST results are available for this feature:
BLAST of CX046616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EIF3C_MEDTR2.055e-7781.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_ARATH5.980e-7781.55Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_BOTFB1.065e-4153.29Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_SCLS12.373e-4152.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROSE3.427e-4051.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROME3.427e-4051.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_BOMMO4.476e-4054.84Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROAN9.971e-4051.81Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_DROWI2.221e-3951.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3C_PHANO2.901e-3948.75Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_9B06_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9B06-D11-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046616 ID=CX046616; Name=CX046616; organism=Citrus sinensis; type=EST; length=510bp
AAGTATTGCACAATTCAGATGGACAGCCTCCAGGAGCTCAAGATTTATGT
GCATATGGTATGGCATCTGACGTCTCCTTTCCAGCCTTTCCTGTTCTGGA
GTCTTCTCATGATATCTACTTTGTGAAATACCTTGGGCAAGCAACTCCTT
CACCTTTCCACCCGAATACAGCTCAGAAAGGCAGCTGTGTCCTTCAGCAT
TCATTCCAACACGAAATGCACAAAGACCAAGCTGTGCCATAGCTCTATTG
AAAAGAATCTGGGATAGAACATCCATTTGCTGAACATTATCTTGTAGATG
ACTCATAAGCAGCAAGTCACGGGCAGTTGAAAATTCATCCAAGAGCGCAT
GATGGTAAATATCGCAAAGCATCGCACGGGCCTTTGTCCTCTCATCTCCA
TACTTGTATATAAGGGATACAAGCATATCCATCATTGTTCTGCTATTTTC
AGGAAAGGTTGGTTTCCGAGGCACAAGCTCAGGAACAGAAATAAATGCAG
AAGGGCCCCT
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