CX046607

Overview
NameCX046607
Unique NameCX046607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX046607 vs. ExPASy Swiss-Prot
Match: KING1_ARATH (SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.722e-54
Identity = 111/173 (64.16%), Postives = 127/173 (73.41%), Query Frame = 3 
Query:   81 EAQLGMKVEDLWDVLEPQLSPTEKLNACFESIPVEAFP-PPPSQVIEIKSDTSLAEAVEILAQHRILSAPVVDVDAPEDASWIDRYIGIVEFAGIAVWILHQXXXXXXXXXXXXXXXXXXVNGMSKAALFKDLGPESASMTSGNFFEALTTSEFYKNTKVRDIAGSFRWAPFL 596
            EA+LGM+VEDLWD  +PQLSP EKLNACFESIPV AFP    SQ IEI+SDTSLAEAV+ L++ ++LSAPVVDVDAPEDASWIDRYIGIVEF GI VW+LHQ                   NG S       L    +++TSGNFFE LT+SE YKNTKVRDI+G+FRWAPFL
Sbjct:   25 EAKLGMRVEDLWDEQKPQLSPNEKLNACFESIPVSAFPLSSDSQDIEIRSDTSLAEAVQTLSKFKVLSAPVVDVDAPEDASWIDRYIGIVEFPGIVVWLLHQLEPPSPRSPAVAAS-----NGFSHDFTTDVLDNGDSAVTSGNFFEVLTSSELYKNTKVRDISGTFRWAPFL 192

HSP 2 Score: 24.6386 bits (52), Expect = 1.722e-54
Identity = 11/15 (73.33%), Postives = 12/15 (80.00%), Query Frame = 1 
Query:  664 IPVVDLGEGTIDNII 708
            IPVVDLG   I+NII
Sbjct:  215 IPVVDLGVAKIENII 229
The following BLAST results are available for this feature:
BLAST of CX046607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KING1_ARATH1.722e-5464.16SNF1-related protein kinase regulatory subunit gam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_9A12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9A12-B23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046607 ID=CX046607; Name=CX046607; organism=Citrus sinensis; type=EST; length=709bp
GATCATTCGTATTGATGGCGAGTGTGCAATTACAGAGACAAGGGAGTAGT
CCAAGGCAACAGGATAGTCCTCGGAGTCCAGAGGCGCAGCTGGGGATGAA
AGTGGAGGATTTGTGGGACGTTTTGGAACCACAGCTGAGTCCCACGGAGA
AGCTCAACGCCTGCTTTGAAAGCATCCCTGTTGAGGCTTTCCCTCCTCCG
CCTTCACAAGTGATTGAGATAAAATCGGACACCAGTCTAGCTGAAGCGGT
TGAAATACTGGCCCAACACAGAATTCTTAGTGCTCCTGTAGTGGATGTTG
ATGCACCCGAGGATGCTAGTTGGATAGACAGATACATTGGCATTGTTGAG
TTTGCAGGAATTGCTGTATGGATTTTGCATCAGTCAGAACCTCCTTCTCC
AAGGAGTTCATCCCCTAGTTCTGCGTTGGCTGCAGCAGTTAATGGCATGT
CTAAGGCTGCTCTATTTAAGGATTTAGGCCCTGAATCTGCTTCAATGACT
TCCGGAAACTTTTTTGAAGCTTTGACTACTTCTGAATTCTATAAGAACAC
TAAGGTACGAGACATCGCAGGGTCATTTCGCTGGGCTCCATTCCTTTGCT
CTGCAGAAATCCAACTCCTTCTTGACCATGCTTCTGTTGCTTTCAAAGTA
CAAAATGAAGAGCATTCCTGTAGTTGATTTGGGTGAAGGGACGATTGATA
ACATTATCA
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