CX046606

Overview
NameCX046606
Unique NameCX046606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3791 contig Csv1_Contig3791:1..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046606 vs. ExPASy Swiss-Prot
Match: KING1_ARATH (SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.691e-55
Identity = 90/131 (68.70%), Postives = 114/131 (87.02%), Query Frame = -3 
Query:  327 LLKKGGNKAVGNISLRDIQFLLTAPEIYHDYRSITAKNFLTAVRKYMEEHHHEDSPLLSGMVTCSRNHTIKELIHLLDSKKIHRIYVVDFNGNLEGVITLRDIISRLVHEPPGYFGDFFDGVLPLPENSRV 719
            ++++   K VGNISLRD+QFLLTAPEIYHDYRSIT KNFL +VR+++E+     +P++SG++ C++NHT+KELI +LD++KIHRIYVVD  GNLEG+ITLRDII+RLVHEP GYFGDFFDGV+PLPEN RV
Sbjct:  294 VIERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIYVVDDFGNLEGLITLRDIIARLVHEPSGYFGDFFDGVMPLPENYRV 424

HSP 2 Score: 41.5874 bits (96), Expect = 2.691e-55
Identity = 18/22 (81.82%), Postives = 21/22 (95.45%), Query Frame = -2 
Query:  709 PVLQAFKLKRRKKIGGIPVVEK 774
            PVLQAFKL RRK+IGGIPV+E+
Sbjct:  276 PVLQAFKLMRRKRIGGIPVIER 297
The following BLAST results are available for this feature:
BLAST of CX046606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KING1_ARATH2.691e-5568.70SNF1-related protein kinase regulatory subunit gam... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_9A12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9A12-B23-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046606 ID=CX046606; Name=CX046606; organism=Citrus sinensis; type=EST; length=775bp
TTTTTTTTATATAGGAAATGCACCAATTACCGCAGGCCTGACTTATTTTT
TCTCATGAAAAAACTAACCATTGGTATCCAAAGGAACCATTAAAGTGTTC
CAATTATTAGACTAATTTACAGAAAGGGACTAACATGGGTTTGGTGGATA
CAGAAACTGAGAAACATGTACAGAAGATCTAACTCAGCTAAGCAAGATGG
TTTTCTATTACATCAGCATGAAATAAACTACGTTACAATCACTGCATCCA
ACCAGTCTCCGACACACCAACATCAGACAGAAGCAAATGATCAGTTGCTG
AAAACATGAGGGGCTTGTTACCTTTAGACCCTGCTATTCTCAGGCAATGG
CAAGACTCCATCGAAGAAATCACCAAAGTAGCCTGGAGGCTCGTGTACTA
GCCTTGAGATGATGTCTCTCAATGTGATCACACCTTCCAAATTCCCATTA
AAATCCACCACATAAATTCGATGAATTTTTTTGGAATCAAGCAGATGGAT
TAATTCCTTTATTGTGTGGTTTCTGCTGCATGTTACCATGCCACTTAACA
ATGGTGAGTCCTCATGATGATGTTCTTCCATGTACTTTCTAACTGCTGTC
AGGAAGTTCTTAGCAGTGATAGATCTATAATCGTGATAGATCTCTGGTGC
AGTTAAAAGGAACTGAATATCTCTCAGGCTTATATTACCCACGGCCTTAT
TACCGCCTTTTTTCAACAACAGGTATGCCTCCAATTTTCTTTCTCCTCTT
CAACTTAAATGCCTGAAGCACTGGT
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