CX046593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 4.464e-57 Identity = 111/154 (72.08%), Postives = 130/154 (84.42%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ELAK IG++GLVAGQVVD+ SEG D+G+EHLEFIH HKTAALLE D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKAAPLIALANYIAYR N Sbjct: 204 ELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 8.419e-56 Identity = 114/154 (74.03%), Postives = 130/154 (84.42%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ELAK IGA+GLVAGQVVDINSEG ++ +E LEFIH HKTA LLE GTD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKAAPLIALANYIA+RQN Sbjct: 217 ELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 214.542 bits (545), Expect = 3.199e-55 Identity = 109/156 (69.87%), Postives = 131/156 (83.97%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ELAK IG +GLVAGQVVDI+SEG D+G+EHLEFIH HKTAALLE G+D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL FD +K APL+ALANYIAYRQN Sbjct: 216 ELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 1.941e-52 Identity = 106/156 (67.95%), Postives = 128/156 (82.05%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ELAK IG +GLVAGQVVDI+SEG ++G+EHL+FIH HKTAALLE G+D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL FD +K APL+ALANYIA RQN Sbjct: 211 ELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 1.065e-50 Identity = 105/154 (68.18%), Postives = 120/154 (77.92%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ELAK IG +GLVAGQV DI G + +E LEFIH HKTAALLE GT+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL FD KAAPLIALA+YIAYR N Sbjct: 216 ELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 188.734 bits (478), Expect = 1.880e-47 Identity = 97/156 (62.18%), Postives = 123/156 (78.85%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSE--GRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ELA+ IG GLVAGQ++D+ SE +G+EHLEFIH HKTAALLE GT+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL FD KAAPL+ALA+YIA R N Sbjct: 205 ELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 182.185 bits (461), Expect = 1.760e-45 Identity = 94/156 (60.26%), Postives = 117/156 (75.00%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEG--RKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ELAK IG GLVAGQ D++SEG + D+G+E LE+IH HKT +LLE GT+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+ +KL +DA++ L FD +K PLIAL N+IA R + Sbjct: 217 ELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 5.120e-45 Identity = 95/154 (61.69%), Postives = 114/154 (74.03%), Query Frame = -3 Query: 147 ELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYR 602 ELA+ IG GLVAGQ +DI+SEG ++G+EHLEFIH HKTA LLE G+D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+ +L KDA+Q L F EK APL+AL +IA R Sbjct: 221 ELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 1.884e-39 Identity = 77/158 (48.73%), Postives = 114/158 (72.15%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEG----RKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 E+A+ +G +GLVAGQ D+ E +D + +LE +H HKTA L+E G+D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+ KLTYPK++G++ +++ A +LN++AQ+ L FD +K PL++LA+YI RQN Sbjct: 179 EMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.309e-29 Identity = 64/154 (41.56%), Postives = 98/154 (63.64%), Query Frame = -3 Query: 141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602 ++A + GLV GQ++D++SEG+ D +E L FIH HKT ALLE + ++ + +A+ IGL FQ++DD+LD+ + ++LGK+ GKDL K TYP G+EES K A+ L ++A++++ FD KA PLIA+A++I R N Sbjct: 148 QVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300 The following BLAST results are available for this feature:
BLAST of CX046593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >CX046593 ID=CX046593; Name=CX046593; organism=Citrus sinensis; type=EST; length=604bpback to top |