CX046593

Overview
NameCX046593
Unique NameCX046593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1880 contig Csv1_Contig1880:925..1528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.464e-57
Identity = 111/154 (72.08%), Postives = 130/154 (84.42%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ELAK IG++GLVAGQVVD+ SEG  D+G+EHLEFIH HKTAALLE             D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKAAPLIALANYIAYR N
Sbjct:  204 ELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.419e-56
Identity = 114/154 (74.03%), Postives = 130/154 (84.42%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ELAK IGA+GLVAGQVVDINSEG  ++ +E LEFIH HKTA LLE           GTD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKAAPLIALANYIA+RQN
Sbjct:  217 ELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 3.199e-55
Identity = 109/156 (69.87%), Postives = 131/156 (83.97%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ELAK IG +GLVAGQVVDI+SEG    D+G+EHLEFIH HKTAALLE           G+D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL  FD +K APL+ALANYIAYRQN
Sbjct:  216 ELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.941e-52
Identity = 106/156 (67.95%), Postives = 128/156 (82.05%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ELAK IG +GLVAGQVVDI+SEG    ++G+EHL+FIH HKTAALLE           G+D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL  FD +K APL+ALANYIA RQN
Sbjct:  211 ELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.065e-50
Identity = 105/154 (68.18%), Postives = 120/154 (77.92%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ELAK IG +GLVAGQV DI   G   + +E LEFIH HKTAALLE           GT+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL  FD  KAAPLIALA+YIAYR N
Sbjct:  216 ELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.880e-47
Identity = 97/156 (62.18%), Postives = 123/156 (78.85%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSE--GRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ELA+ IG  GLVAGQ++D+ SE      +G+EHLEFIH HKTAALLE           GT+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL  FD  KAAPL+ALA+YIA R N
Sbjct:  205 ELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.760e-45
Identity = 94/156 (60.26%), Postives = 117/156 (75.00%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEG--RKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ELAK IG  GLVAGQ  D++SEG  + D+G+E LE+IH HKT +LLE           GT+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+  +KL +DA++ L  FD +K  PLIAL N+IA R +
Sbjct:  217 ELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 5.120e-45
Identity = 95/154 (61.69%), Postives = 114/154 (74.03%), Query Frame = -3
Query:  147 ELAKYIGADGLVAGQVVDINSEGR--KDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYR 602
            ELA+ IG  GLVAGQ +DI+SEG    ++G+EHLEFIH HKTA LLE           G+D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+   +L KDA+Q L  F  EK APL+AL  +IA R
Sbjct:  221 ELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.884e-39
Identity = 77/158 (48.73%), Postives = 114/158 (72.15%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEG----RKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            E+A+ +G +GLVAGQ  D+  E      +D  + +LE +H HKTA L+E           G+D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+  KLTYPK++G++ +++ A +LN++AQ+ L  FD +K  PL++LA+YI  RQN
Sbjct:  179 EMARAVGTEGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of CX046593 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.309e-29
Identity = 64/154 (41.56%), Postives = 98/154 (63.64%), Query Frame = -3
Query:  141 ELAKYIGADGLVAGQVVDINSEGRKDLGIEHLEFIHEHKTAALLEXXXXXXXXXXXGTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAAPLIALANYIAYRQN 602
            ++A  +   GLV GQ++D++SEG+ D  +E L FIH HKT ALLE             + ++ +   +A+ IGL FQ++DD+LD+  + ++LGK+ GKDL   K TYP   G+EES K A+ L ++A++++  FD  KA PLIA+A++I  R N
Sbjct:  148 QVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of CX046593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GGPPS_CATRO4.464e-5772.08Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR8.419e-5674.03Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH3.199e-5569.87Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL1.941e-5267.95Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN1.065e-5068.18Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH1.880e-4762.18Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH1.760e-4560.26Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP2_ARATH5.120e-4561.69Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH1.884e-3948.73Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA2.309e-2941.56Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_9A05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-9A05-B9-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046593 ID=CX046593; Name=CX046593; organism=Citrus sinensis; type=EST; length=604bp
CATCGCTGAATAAGAAGAATGTTTATAAAATATTAAAAAAGCTCACCAGT
TACTCTCAAGATGAGGTAAGCTTAAATATACAATTACAAATCAAACGACA
CCCAATTCCCCTGGAGGCATTAACCCAATTAAAAACATCAATTCTGCCTA
TAAGCAATATAGTTAGCCAAAGCAATCAAAGGCGCGGCCTTTTCCTGATC
AAATTCCGACAATTGCTGTTGAGCATCTTTATTCAACTTGTCAGCTAACT
TCTTCGATTCTTCGATCCCCAGCAACTTGGGATACGTTAACTTATCGGCC
ACCAAATCTTTGCCGGCAGTCTTCCCCAATTCTTTTGACGACTTGGTCAG
ATCGAGGATATCATCAACTACTTGAAACAAAAGCCCAATACAGCGAGCAA
AAGTTCTCAGTTTCTCGACTTCGTTGTCAGTTCCGCCGCCCAATATGGCT
CCAATAACAACAGCAGCCTCCAATAAAGCTGCAGTTTTGTGTTCATGTAT
AAATTCAAGATGCTCAATTCCCAAATCTTTTCGGCCTTCAGAATTGATAT
CAACAACTTGGCCGGCGACAAGCCCATCAGCTCCGATATATTTAGCCAAT
TCCG
back to top