CX046549 | Citrus Genome Database

Overview


Name	CX046549
Unique Name	CX046549
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	733

Libraries


Library Name	Type
Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig12042	contig	Csv1_Contig12042:164..895.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 7.016e-80
Identity = 153/240 (63.75%), Postives = 184/240 (76.67%), Query Frame = 3

Query:    9 EDPDVERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKFEVLDHYIMHGSNGFG 728
            ED D + +G LSRSL+GKKATD+RLAAIAVGTA RGGLGKLSI G+NS + V+  GLR+I R CPSL  LSLWN S++ D GL EIA GC QLEKL+L +C  ITD+ L+ IAK+CP L +LT+E+CS IG+EGL A+ R C  LKS+SIK+C LV DQGIASLLS+ T SL K+KLQ LN+TDVSLAV+GHYG+++TDL L GL HVSE+GFWVMG+G GLQK   L      G    G
Sbjct:  115 EDGD-DCEGCLSRSLDGKKATDVRLAAIAVGTAGRGGLGKLSIRGSNSAK-VSDLGLRSIGRSCPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELTLEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQMLNVTDVSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGNGVGLQKLNSLTITACQGVTDMG 352

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BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 3.984e-75
Identity = 142/235 (60.43%), Postives = 172/235 (73.19%), Query Frame = 3

Query:   24 ERDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKFEVLDHYIMHGSNGFG 728
            E +G+LSRSLEGKKATD+RLAAIAVGT+SRGGLGKL I G+     VT  GL A+A GCPSLR++SLWN  +V D GL EIA  C  +EKLDL +CP ITD  L+ IA+NC  L DLTI+SCS +GNEGL+A+ R C NL+SISI+ C  +GDQG+A LL+ A   L KVKLQ LN++ +SLAVIGHYG AVTDL L GL  V+E+GFWVMG+  GL+K + L      G    G
Sbjct:  108 EGEGFLSRSLEGKKATDLRLAAIAVGTSSRGGLGKLQIRGSGFESKVTDVGLGAVAHGCPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLTIDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAGSYLTKVKLQMLNVSGLSLAVIGHYGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVG 342

HSP 2 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 57/204 (27.94%), Postives = 84/204 (41.18%), Query Frame = 3

Query:  117 GLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKN-----------------------------CPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIG-HYGMAVTDLFLTGLPHVS 635
            GL KL      S RG+T  GL A+  GCP L+ +SL     V  +GL  +A     LE L L +C  I    L+    N                             C  L  L+I  C   G+  L  +G+FC  L+ + +     V D G+  LL S    L KV L   +N++D +++ I   +G  +  L L G  +++
Sbjct:  323 GLKKLKSLSVMSCRGMTDVGLEAVGNGCPDLKHVSLNKCLLVSGKGLVALAKSALSLESLKLEECHRINQFGLMGFLMNCGSKLKAFSLANCLGISDFNSESSLPSPSCSSLRSLSIRCCPGFGDASLAFLGKFCHQLQDVELCGLNGVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSAISVCHGRTLESLNLDGCKNIT 526

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FBL4_ARATH (F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.662e-20
Identity = 65/214 (30.37%), Postives = 114/214 (53.27%), Query Frame = 3

Query:   51 LEGKKATDIRLAAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKFEV 689
            L+    TD+  AA+     S   L +L+++   S +  T  G+RAI +G   L+ L+L +   V  +GL  IA+GC +LE++++  C  I  R +  I K+CP+L +L +  C  IGN  LQ +G+ C +L+ + + DC  +GD  + S ++    +L+K+ ++R   I +  +  IG +  ++T+L L     V  +    +G G  LQ+  V
Sbjct:  276 LQCVSVTDVAFAAVGELCTS---LERLALY---SFQHFTDKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCS-IAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCSLQQLNV 482

HSP 2 Score: 97.8265 bits (242), Expect = 6.247e-20
Identity = 57/185 (30.81%), Postives = 95/185 (51.35%), Query Frame = 3

Query:  147 NSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLN-ITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGHGLQKFEVLDH 698
            N    + + G+ AI + CP L+ L+L     +G+  L EI  GC  LE L L  C  I D A+ +IAK C  L  L I  C  IGN+G+ ++G+ C +L  +S++ C  VG++ + ++      SL+++ +   N I+D  +  I      +T L ++ L ++ +     +G G  + K  VL H
Sbjct:  354 NGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKKLHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGC--SLQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSH 536

HSP 3 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 46/155 (29.68%), Postives = 87/155 (56.13%), Query Frame = 3

Query:  231 TSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKL-QRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG-HGLQKFEV 689
            +SS+ D GL  +ANG  ++E L L  CP ++   L ++A+ C  L  L ++ C  +G++GL AVG+FC  L+ ++++ C  + D G+  L+   + SL+ + +     ITD+SL  +G +   +  L+L    ++ ++G   +  G H L+  ++
Sbjct:  124 SSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGC-YVGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYLDS-EYIHDKGLIAVAQGCHRLKNLKL 276

HSP 4 Score: 80.8777 bits (198), Expect = 7.903e-15
Identity = 58/200 (29.00%), Postives = 98/200 (49.00%), Query Frame = 3

Query:  144 NNSTRGVTSAGLRAIARGCPSLRVLSL-W--NTSS----------------------VGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPK-LIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG 665
            N  +  +T  GL A+A G P +  LSL W  N SS                      VGD+GL  +   C QLE+L+L  C  +TD  +I +   C K L  + + + + I +  L+AVG  C  L+ + + D   + D+G+ + ++   + L+ +KLQ +++TDV+ A +G    ++  L L    H +++G   +G G
Sbjct:  121 NVESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVGDQGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVLYL-DSEYIHDKGLIA-VAQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMRAIGKG 318

HSP 5 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = 3

Query:   18 DVERDGYLSRSLEGKKATDIRL---------AAIAVGTASRGGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIK 461
            ++   G +S     K  T++ L         A IA+G      L +L++ G N    ++ AG+ AIARGCP L  L +    ++GD  L E+  GC  L+ L L  C  ITD  L  + + C  L    +  C  I + G+  V   CP++K + I+
Sbjct:  436 EIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGC--SLQQLNVSGCNQ---ISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGVATVVSSCPHIKKVLIE 587

HSP 6 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 41/133 (30.83%), Postives = 72/133 (54.14%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITD 560
            V +  L AI +GC SL+ L++   + + D G+  IA GC QL  LD+     I D  L  + + CP L DL +  C  I + GL  + + C  L++  +  C  +   G+A+++SS  + ++KV +++  +T+
Sbjct:  463 VGNKALIAIGKGC-SLQQLNVSGCNQISDAGITAIARGCPQLTHLDISVLQNIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGVATVVSSCPH-IKKVLIEKWKVTE 593

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FBL3_ARATH (F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.684e-18
Identity = 53/141 (37.59%), Postives = 78/141 (55.32%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQ-RLNITDVSLAVIG 581
            VT  GL+AI   C SL+ +SL    SV DEGL  +      L KLD+  C  ++  ++  IA +CP L+ L +ESCS +  E    +G+ C  L+ + + D   + D+G+ S+  S+  SL  +KL   LNITD  L+ IG
Sbjct:  316 VTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTD-NEIDDEGLKSI--SSCLSLSSLKLGICLNITDKGLSYIG 453

HSP 2 Score: 30.8018 bits (68), Expect = 1.684e-18
Identity = 12/28 (42.86%), Postives = 19/28 (67.86%), Query Frame = 1

Query:  649 GLWAVVMGCKNLKSLTITSCMGVTDLGL 732
            GL  + MGC NL+ L +   +G+TD+G+
Sbjct:  448 GLSYIGMGCSNLRELDLYRSVGITDVGI 475

HSP 3 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 43/143 (30.07%), Postives = 78/143 (54.55%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYG 590
            +T  GL  I  GC +LR L L+ +  + D G+  IA GC  LE +++  C  ITD++L++++K C  L       C +I ++GL A+   C  L  + +K C  + D G+ + L+  + +L+++ +    +T+V L  + + G
Sbjct:  444 ITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSLVSLSK-CSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGLLA-LAHFSQNLKQINVSDTAVTEVGLLSLANIG 584

HSP 4 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 46/173 (26.59%), Postives = 85/173 (49.13%), Query Frame = 3

Query:  159 GVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNIT------DVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMG 659
            GV    L+++   C SL+ L   +  ++   GL  + +G   L++LDL  C ++      +  K    L  + ++ C S+  +GL+A+G  C +LK +S+  C  V D+G++SL+      ++   L++L+IT       VS+  I +    +  L +     VS   FW++G
Sbjct:  238 GVDDDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLKKVSALQSIRLDGC-SVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLV------MKLKDLRKLDITCCRKLSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIG 403

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FXL20_MOUSE (F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 56/169 (33.14%), Postives = 89/169 (52.66%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG 665
            VT  G++A+ RGC  L+ L L   + + DE L  I   C +L  L+L  C  ITD  LITI + C KL  L    CS+I +  L A+G+ CP L+ + +  C  + D G  +L  +  + LEK+ L+  + ITD +L  +  +   +  L L+    +++ G   +G+G
Sbjct:  182 VTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNC-HELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNG 349

HSP 2 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 3

Query:  117 GLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFC---PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKL 539
            G  KL     +    +T A L A+ + CP LR+L +   S + D G   +A  CH+LEK+DL +C  ITD  LI ++ +CP+L  L++  C  I ++G++ +G        L+ I + +C L+ D  +  L S   +SLE+++L
Sbjct:  245 GCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKS--CHSLERIEL 386

HSP 3 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 3

Query:  114 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSE 638
            G L KLS+ G     GV    LR  A+ C ++ VLSL   +   D     ++  C +L  LDL  C +IT+ +L  +++ CP L  L I  C  +  +G+QA+ R C  LK++ +K C  + D+ +   + +    L  + LQ  L ITD  L  I      +  L  +G  ++++
Sbjct:   91 GFLRKLSLRG---CLGVGDNALRTFAQNCRNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEAL-KYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITD 262

HSP 4 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATY--SLEKVKLQRLN-ITDVSL 569
            +T  GL  I RGC  L+ L     S++ D  L  +   C +L  L++ +C  +TD    T+A+NC +L  + +E C  I +  L  +   CP L+ +S+  C L+ D GI  L + A     LE ++L     ITD SL
Sbjct:  234 ITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASL 372

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FXL20_HUMAN (F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 56/169 (33.14%), Postives = 89/169 (52.66%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG 665
            VT  G++A+ RGC  L+ L L   + + DE L  I   C +L  L+L  C  ITD  LITI + C KL  L    CS+I +  L A+G+ CP L+ + +  C  + D G  +L  +  + LEK+ L+  + ITD +L  +  +   +  L L+    +++ G   +G+G
Sbjct:  182 VTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNC-HELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNG 349

HSP 2 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 3

Query:  117 GLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFC---PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKL 539
            G  KL     +    +T A L A+ + CP LR+L +   S + D G   +A  CH+LEK+DL +C  ITD  LI ++ +CP+L  L++  C  I ++G++ +G        L+ I + +C L+ D  +  L S   +SLE+++L
Sbjct:  245 GCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKS--CHSLERIEL 386

HSP 3 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 3

Query:  114 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSE 638
            G L KLS+ G     GV    LR  A+ C ++ VL+L   +   D     ++  C +L  LDL  C +IT+ +L  +++ CP L  L I  C  +  +G+QA+ R C  LK++ +K C  + D+ +   + +    L  + LQ  L ITD  L  I      +  L  +G  ++++
Sbjct:   91 GFLRKLSLRG---CLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEAL-KYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITD 262

HSP 4 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATY--SLEKVKLQRLN-ITDVSL 569
            +T  GL  I RGC  L+ L     S++ D  L  +   C +L  L++ +C  +TD    T+A+NC +L  + +E C  I +  L  +   CP L+ +S+  C L+ D GI  L + A     LE ++L     ITD SL
Sbjct:  234 ITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASL 372

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FXL20_BOVIN (F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.790e-17
Identity = 56/169 (33.14%), Postives = 89/169 (52.66%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG 665
            VT  G++A+ RGC  L+ L L   + + DE L  I   C +L  L+L  C  ITD  LITI + C KL  L    CS+I +  L A+G+ CP L+ + +  C  + D G  +L  +  + LEK+ L+  + ITD +L  +  +   +  L L+    +++ G   +G+G
Sbjct:  182 VTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNC-HELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNG 349

HSP 2 Score: 85.1149 bits (209), Expect = 4.190e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 3

Query:  117 GLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFC---PNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKL 539
            G  KL     +    +T A L A+ + CP LR+L +   S + D G   +A  CH+LEK+DL +C  ITD  LI ++ +CP+L  L++  C  I ++G++ +G        L+ I + +C L+ D  +  L S   +SLE+++L
Sbjct:  245 GCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKS--CHSLERIEL 386

HSP 3 Score: 78.1814 bits (191), Expect = 5.122e-14
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 3

Query:  114 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSE 638
            G L KLS+ G     GV    LR  A+ C ++ VL+L   +   D     ++  C +L  LDL  C +IT+ +L  +++ CP L  L I  C  +  +G+QA+ R C  LK++ +K C  + D+ +   + +    L  + LQ  L ITD  L  I      +  L  +G  ++++
Sbjct:   91 GFLRKLSLRG---CLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEAL-KYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITD 262

HSP 4 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 46/139 (33.09%), Postives = 70/139 (50.36%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATY--SLEKVKLQRLN-ITDVSL 569
            +T  GL  I RGC  L+ L     S++ D  L  +   C +L  L++ +C  +TD    T+A+NC +L  + +E C  I +  L  +   CP L+ +S+  C L+ D GI  L + A     LE ++L     ITD SL
Sbjct:  234 ITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASL 372

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FBXL2_MOUSE (F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.950e-17
Identity = 55/180 (30.56%), Postives = 93/180 (51.67%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSGH-GLQKFEVLD 695
            +T  G+ A+ RGC  L+ L L   + + DE L  I N CH+L  L+L  C  ITD  ++ I + C +L  L +  CS++ +  L A+G  CP L+ +    C  + D G  +LL+   + LEK+ L+  + ITD +L  +  +   +  L L+    +++ G   + S   G ++  VL+
Sbjct:  169 ITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGF-TLLARNCHELEKMDLEECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRVLE 347

HSP 2 Score: 72.4034 bits (176), Expect = 2.811e-12
Identity = 56/219 (25.57%), Postives = 101/219 (46.12%), Query Frame = 3

Query:  114 GGLGKLSIHGNNSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIA-------SLLSSATYSLEKV-------------KLQRL------NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG-HGLQKFEV 689
            G L KLS+ G     GV  + L+  A+ C ++  L+L   + + D     ++  C +L+ LDL  C ++T+ +L  I++ C  L  L +  C  I  EG++A+ R C  LK++ ++ C  + D+ +         L+S    S  ++             +LQ L      N+TD SL  +G     +  L      H+++ GF ++    H L+K ++
Sbjct:   78 GFLRKLSLRG---CIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKMDL 293

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FBXL2_PONAB (F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 55/180 (30.56%), Postives = 93/180 (51.67%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERG-FWVMGSGHGLQKFEVLD 695
            +T  G+ A+ RGC  L+ L L   + + DE L  I N CH+L  L+L  C  ITD  ++ I + C +L  L +  CS++ +  L A+G  CP L+ +    C  + D G  +LL+   + LEK+ L+  + ITD +L  +  +   +  L L+    +++ G   +  S  G ++  VL+
Sbjct:  169 ITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGF-TLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLE 347

HSP 2 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 46/183 (25.14%), Postives = 89/183 (48.63%), Query Frame = 3

Query:  147 NSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG-HGLQKFEV 689
            N    +T +   +++R C  L+ L L +  S+ +  L  I+ GC  LE L+L  C  IT   +  + + C  L  L +  C+ + +E L+ +  +C  L S++++ C  + D+G+  +     + L+ + L    N+TD SL  +G     +  L      H+++ GF ++    H L+K ++
Sbjct:  112 NGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGC-HRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDL 293

HSP 3 Score: 66.2402 bits (160), Expect = 6.730e-12
Identity = 42/146 (28.77%), Postives = 66/146 (45.21%), Query Frame = 3

Query:  207 LRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERG 644
            LR LSL     VGD  L   A  C  +E L+L  C  ITD    ++++ C KL  L + SC SI N  L+ +   C NL+ +++  C  +   GI +L+         +      + D +L  I +Y   +  L L     +++ G
Sbjct:   80 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEG 225

HSP 4 Score: 25.0238 bits (53), Expect = 6.730e-12
Identity = 9/28 (32.14%), Postives = 16/28 (57.14%), Query Frame = 1

Query:  649 GLWAVVMGCKNLKSLTITSCMGVTDLGL 732
            G+  +  GC  L++L ++ C  +TD  L
Sbjct:  225 GVVQICRGCHRLQALCLSGCSNLTDASL 252

[Close]

BLAST of CX046549 vs. ExPASy Swiss-Prot
Match: FBXL2_HUMAN (F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 55/180 (30.56%), Postives = 93/180 (51.67%), Query Frame = 3

Query:  162 VTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQR-LNITDVSLAVIGHYGMAVTDLFLTGLPHVSERG-FWVMGSGHGLQKFEVLD 695
            +T  G+ A+ RGC  L+ L L   + + DE L  I N CH+L  L+L  C  ITD  ++ I + C +L  L +  CS++ +  L A+G  CP L+ +    C  + D G  +LL+   + LEK+ L+  + ITD +L  +  +   +  L L+    +++ G   +  S  G ++  VL+
Sbjct:  169 ITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGF-TLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILHLSNSTCGHERLRVLE 347

HSP 2 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 46/183 (25.14%), Postives = 89/183 (48.63%), Query Frame = 3

Query:  147 NSTRGVTSAGLRAIARGCPSLRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRL-NITDVSLAVIGHYGMAVTDLFLTGLPHVSERGFWVMGSG-HGLQKFEV 689
            N    +T +   +++R C  L+ L L +  S+ +  L  I+ GC  LE L+L  C  IT   +  + + C  L  L +  C+ + +E L+ +  +C  L S++++ C  + D+G+  +     + L+ + L    N+TD SL  +G     +  L      H+++ GF ++    H L+K ++
Sbjct:  112 NGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGC-HRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDL 293

HSP 3 Score: 66.2402 bits (160), Expect = 6.730e-12
Identity = 42/146 (28.77%), Postives = 66/146 (45.21%), Query Frame = 3

Query:  207 LRVLSLWNTSSVGDEGLCEIANGCHQLEKLDLCQCPAITDRALITIAKNCPKLIDLTIESCSSIGNEGLQAVGRFCPNLKSISIKDCRLVGDQGIASLLSSATYSLEKVKLQRLNITDVSLAVIGHYGMAVTDLFLTGLPHVSERG 644
            LR LSL     VGD  L   A  C  +E L+L  C  ITD    ++++ C KL  L + SC SI N  L+ +   C NL+ +++  C  +   GI +L+         +      + D +L  I +Y   +  L L     +++ G
Sbjct:   80 LRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEG 225

HSP 4 Score: 25.0238 bits (53), Expect = 6.730e-12
Identity = 9/28 (32.14%), Postives = 16/28 (57.14%), Query Frame = 1

Query:  649 GLWAVVMGCKNLKSLTITSCMGVTDLGL 732
            G+  +  GC  L++L ++ C  +TD  L
Sbjct:  225 GVVQICRGCHRLQALCLSGCSNLTDASL 252

The following BLAST results are available for this feature:

BLAST of CX046549 vs. ExPASy Swiss-Prot

BLAST of CX046549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19


Match Name	E-value	Identity	Description
EBF1_ARATH	7.016e-80	63.75	EIN3-binding F-box protein 1 OS=Arabidopsis thalia...	[more]
EBF2_ARATH	3.984e-75	60.43	EIN3-binding F-box protein 2 OS=Arabidopsis thalia...	[more]
FBL4_ARATH	3.662e-20	30.37	F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana...	[more]
FBL3_ARATH	1.684e-18	37.59	F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana...	[more]
FXL20_MOUSE	3.790e-17	33.14	F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbx...	[more]
FXL20_HUMAN	3.790e-17	33.14	F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBX...	[more]
FXL20_BOVIN	3.790e-17	33.14	F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL2...	[more]
FBXL2_MOUSE	4.950e-17	30.56	F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl...	[more]
FBXL2_PONAB	1.440e-16	30.56	F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL...	[more]
FBXL2_HUMAN	1.440e-16	30.56	F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS07_8G02_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8G02-M4-1-6.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX046549 ID=CX046549; Name=CX046549; organism=Citrus sinensis; type=EST; length=733bp
CTGATGCTGAAGATCCGGATGTTGAGCGTGACGGATACCTTTCCAGGAGC
TTGGAAGGAAAGAAGGCAACGGATATTAGACTTGCTGCCATTGCTGTTGG
TACTGCCAGCCGTGGAGGACTGGGCAAGCTTTCCATCCATGGAAACAATT
CTACTCGTGGGGTGACAAGCGCTGGCCTTAGGGCTATTGCCCGTGGCTGC
CCATCTTTAAGGGTTCTTTCCCTCTGGAATACATCTTCTGTAGGGGATGA
AGGCCTTTGTGAGATTGCTAATGGATGTCATCAGCTAGAGAAGCTTGACC
TTTGCCAGTGTCCTGCTATTACTGACCGAGCTTTGATCACAATTGCAAAG
AACTGCCCTAAATTGATTGATCTGACAATAGAGTCTTGCTCAAGCATCGG
AAATGAAGGTCTGCAGGCTGTTGGGAGATTCTGCCCCAATCTGAAGTCCA
TTTCAATCAAGGATTGCCGCCTTGTTGGGGATCAAGGGATTGCTAGTTTG
TTGTCTTCAGCCACTTATTCTCTGGAGAAAGTGAAGCTGCAAAGGTTGAA
CATTACTGATGTTTCTCTTGCTGTTATTGGACACTATGGCATGGCAGTTA
CTGATCTCTTCCTTACTGGCCTTCCACATGTGAGTGAGAGAGGCTTCTGG
GTTATGGGCAGTGGTCATGGGTTGCAAAAATTTGAAGTCCTTGACCATTA
CATCATGCATGGGAGTAACGGATTTGGGCCTTG