CX046545

Overview
NameCX046545
Unique NameCX046545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8876 contig Csv1_Contig8876:376..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046545 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 385.956 bits (990), Expect = 1.510e-106
Identity = 192/251 (76.49%), Postives = 217/251 (86.45%), Query Frame = -1 
Query:  122 IAAPETQPSVESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSF----KSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 862
            IAAPE QP+ ESTSAQQGWRQVVDALCNVVSA+P KAA AVVLQAERELQPWIAKDD++GQKMW+INQRIVK++VELMR +D PESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS        +   E+NG++  S  +FN  +I+W++DI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct:  921 IAAPEIQPTAESTSAQQGWRQVVDALCNVVSATPAKAAAAVVLQAERELQPWIAKDDEEGQKMWKINQRIVKVLVELMRNHDRPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171
[Close]
BLAST of CX046545 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 352.829 bits (904), Expect = 1.416e-96
Identity = 174/248 (70.16%), Postives = 205/248 (82.66%), Query Frame = -1 
Query:  125 IAAPETQPSVESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTIS 862
            IA+PE Q S ESTSA QGWR+VVDALC++VSASPTKA+ A+VLQAE++LQPWIA+DD+QGQKMWR+NQRIVKLI ELMR +DSPE+LVILASASDLLLRATDGMLVDGEACTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQ+D+E+C+ WEAHSR ATG+ + FL  AAKELGC ++
Sbjct:  912 IASPEMQMSAESTSAHQGWRKVVDALCDIVSASPTKASAAIVLQAEKDLQPWIARDDEQGQKMWRVNQRIVKLIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159
The following BLAST results are available for this feature:
BLAST of CX046545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH1.510e-10676.49Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ1.416e-9670.16Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_8F12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8F12-K24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046545 ID=CX046545; Name=CX046545; organism=Citrus sinensis; type=EST; length=862bp
TTAAAAACCAAATGATATCTTTCAAAGCAATTGATCTGGTTATTACCATC
CATAAATCTCACTTGGAAAAATAAATTATAATCACAAACCTCAAATGACT
GCTGTAGGTTATTTTATTTCATATAGATATTGTACAACCTAATTCCTTGG
CAGCGATATCAAGAAACTGAATCGGCATTCCTGTTGCAAGTCGGCTATGG
GCTTCCCAAGTTAAGCATTTTTCGATGTCAGATTGCCAGTTAATTGCATC
AATATTGAAGTAGTGTAACGAAGACCCATGGATGCCATTTCTCTCTACTT
GCTCAATATTTGATTTGAACGAACTGGTATGTAAAAAGTCACGAAGAACT
GAAGTGCTCAGTGCACGGACATGGGCACTTGGATGAGAAAGGCATCGGAT
CGTTGCAGGTAGACGACACTTTAAAAGGTTTGAAAGACCATCTGCAATTG
CTAATCCAGACTTTCCCCACCGCAGGATGGGCTGAATTGCTCTAGCTGTT
GCTTCCAGTAACTCAAGTTGTGGCAGTGTGCAAGCTTCACCATCAACAAG
CATCCCGTCTGTGGCACGTAGAAGCAGGTCTGATGCGCTTGCCAATATTA
CCAGTGACTCTGGACTGTCATAAATTCTCATCAGCTCCACAATAAGTTTT
ACAATCCGCTGGTTGATTCTCCACATCTTCTGACCCTGATCATCATCTTT
GGCTATCCAAGGTTGCAATTCCCTTTCCGCCTGAAGAACAACAGCTGTAG
CCGCTTTCGTGGGTGATGCCGAGACAACATTGCACAGTGCGTCAACCACC
TGTCGCCACCCTTGTTGGGCAGAAGTGCTTTCAACACTCGGTTGGGTTTC
TGGGGCTGCAAT
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