CX046544

Overview
NameCX046544
Unique NameCX046544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2683 contig Csv1_Contig2683:203..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX046544 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 457.218 bits (1175), Expect = 5.073e-128
Identity = 229/277 (82.67%), Postives = 239/277 (86.28%), Query Frame = 3 
Query:    3 DILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYEXXXXXXXXXXXXXXXXXXXXXDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRXXXXXXXXXXLLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYG 833
            DILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIAS RGSGKHPQLM STPRWAVANGAGVILSVCDDE+ARYE                     DEHLVAGLPALEPYARLFHRYYA ATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAE+YA+G++LPRNWMHLHFLRAIG+AMSMR          LLFRILSQPALLFPPL QV+GVE+QH P+GGY S YRKQIEVPAAEATIEATAQGIAS+LCAHGPEVEWRICTIWEAAYG
Sbjct:  196 DILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIAS-RGSGKHPQLMPSTPRWAVANGAGVILSVCDDEVARYETATLTAVAVPALLLPPPTTSLDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGVRLPRNWMHLHFLRAIGIAMSMRAGVAADAAAALLFRILSQPALLFPPLSQVEGVEIQHAPIGGYSSNYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAYG 471
[Close]
BLAST of CX046544 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 436.417 bits (1121), Expect = 9.266e-122
Identity = 215/278 (77.34%), Postives = 232/278 (83.45%), Query Frame = 3 
Query:    3 DILLAAPLGIRSDYFRWCSGVMGKYAAG-ELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYEXXXXXXXXXXXXXXXXXXXXXDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRXXXXXXXXXXLLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYG 833
            DILLAAPLGIRSDYFRWC GVMGKYAAG ELKPPT A SRGSGKHPQLM STPRWAVANGAGVILSVCD+E+ARYE                     DEHLVAGLP LEPYARLFHRYYA ATPSATQRLL GLLEAPPSWAPDALDAAVQLVELLRAAE+Y +G++LP+NWMHLHFLRAIG AMSMR          LLFRILSQP LLFPPLR  +GVE+ HEPLGGY+S Y++Q+EVPA+EATI+ATAQGIAS+LCAHGP+VEWRICTIWEAAYG
Sbjct:  197 DILLAAPLGIRSDYFRWCGGVMGKYAAGGELKPPTTAYSRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETANLTAAAVPALLLPPPTTPLDEHLVAGLPPLEPYARLFHRYYAIATPSATQRLLFGLLEAPPSWAPDALDAAVQLVELLRAAEDYDSGMRLPKNWMHLHFLRAIGTAMSMRAGIAADTSAALLFRILSQPTLLFPPLRHAEGVELHHEPLGGYVSSYKRQLEVPASEATIDATAQGIASMLCAHGPDVEWRICTIWEAAYG 474
The following BLAST results are available for this feature:
BLAST of CX046544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH5.073e-12882.67Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ9.266e-12277.34Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_8F12_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8F12-K24-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046544 ID=CX046544; Name=CX046544; organism=Citrus sinensis; type=EST; length=833bp
CAGATATATTGCTTGCTGCCCCCCTTGGGATCAGAAGTGACTACTTCCGG
TGGTGTAGTGGTGTTATGGGAAAATATGCAGCTGGTGAGCTCAAGCCACC
TACAATAGCATCTTCTCGTGGATCTGGAAAGCATCCTCAGCTCATGCTAT
CAACTCCAAGGTGGGCTGTTGCAAATGGTGCTGGTGTTATATTAAGTGTT
TGTGACGACGAACTTGCTCGCTATGAGACTGCTACTTTAACAGCTGCTGC
TGTCCCGGCACTCCTGCTTCCTCCTGCAACAACAGCATTGGATGAGCATC
TAGTTGCCGGGCTTCCAGCACTTGAGCCATATGCACGCTTATTTCATAGA
TATTATGCGTTCGCAACTCCAAGTGCCACCCAGAGACTACTTCTTGGACT
TCTAGAAGCGCCACCATCATGGGCTCCGGATGCACTTGATGCTGCGGTGC
AGCTTGTAGAACTTCTTCGGGCTGCTGAGGAGTATGCAACTGGTATAAAA
CTTCCTCGGAACTGGATGCATTTGCATTTTTTGCGTGCAATCGGGGTTGC
AATGTCCATGCGAGCGGGTATAGCTGCTGATGCTGCTGCAGCTTTACTTT
TTCGCATACTATCACAGCCTGCATTGCTATTTCCCCCATTAAGGCAAGTT
GATGGAGTTGAAGTTCAACATGAACCTTTGGGTGGTTACATTTCATGCTA
TAGGAAGCAGATAGAGGTGCCTGCAGCTGAAGCAACTATTGAAGCCACTG
CTCAAGGAATTGCATCGGTGCTTTGTGCTCATGGCCCTGAGGTGGAATGG
AGAATCTGTACAATATGGGAAGCAGCTTATGGC
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