CX046541

Overview
NameCX046541
Unique NameCX046541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH1_ORYSJ (Formin-like protein 1 OS=Oryza sativa subsp. japonica GN=FH1 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.950e-48
Identity = 101/154 (65.58%), Postives = 121/154 (78.57%), Query Frame = -2
Query:  361 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVR--PMPTNPALPPAFP 816
            LQVV+ L  EL+NV+KAAAMDSDVLSS V+KLA GI KI EV++LNEE+  +E + +F  SM +FLK+A           SVALS+VKEITEYFHG+SAKEEAHPFRIF+VV++FLS LDQVCKEVGRIN+RTI SSVR  P+P NP +P  FP
Sbjct:  785 LQVVAGLGNELSNVKKAAAMDSDVLSSYVSKLAGGIEKITEVLRLNEEVKSREDAWRFHDSMQKFLKRADDDIIRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMVVRDFLSVLDQVCKEVGRINDRTIASSVRHFPVPVNPMMPQLFP 938          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH1_ARATH (Formin-like protein 1 OS=Arabidopsis thaliana GN=FH1 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.987e-45
Identity = 96/160 (60.00%), Postives = 118/160 (73.75%), Query Frame = -2
Query:  343 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVR--PMPTNPALPPAFPGFNGRQ 816
            LQVVSSL  EL+NV+KAAAMDS+VLSS V+KL+ GI KI E +++   I  + +S++FS SM  FLK+A           SVALS+VKEITEYFHGNSAKEEAHPFRIFLVV++FL  +D+VCKEVG INERT+ SS    P+P NP +P   PG  GR+
Sbjct:  866 LQVVSSLCSELSNVKKAAAMDSEVLSSYVSKLSQGIAKINEAIQVQSTITEESNSQRFSESMKTFLKRAEEEIIRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERTMVSSAHKFPVPVNPMMPQPLPGLVGRR 1025          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH15_ORYSJ (Formin-like protein 15 OS=Oryza sativa subsp. japonica GN=FH15 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.679e-35
Identity = 75/147 (51.02%), Postives = 105/147 (71.43%), Query Frame = -2
Query:  376 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVRPMPTNPAL 816
            L++V+SL GEL NV+KAA MDSD L+S VAKL+AG++KI E ++LN+++   +  ++F  S+ EFL+KA           S+ALS+V+E TE+FHG+S KEE HP RIF+VV++FL+ LD VCK+VGR+NERT   S   +   P L
Sbjct:  624 LRIVASLGGELGNVKKAAGMDSDTLASCVAKLSAGVSKISEALQLNQQLGSDDHCKRFRASIGEFLQKAEAEITAVQAQESLALSLVRETTEFFHGDSVKEEGHPLRIFMVVRDFLTVLDHVCKDVGRMNERTAIGSSLRLENAPVL 770          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH2_ARATH (Formin-like protein 2 OS=Arabidopsis thaliana GN=FH2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.052e-33
Identity = 79/154 (51.30%), Postives = 100/154 (64.94%), Query Frame = -2
Query:  361 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVRPM--PTNPALPPAFP 816
            LQVVS LS +L NV+KAAAMDS+ L +E A++A GI K+ EV+    E+  +    +F  SMN FL K               + MVKE+TEYFHGNS   E HPFRIF VV++FL+ LDQVCKEVGR+NERT+Y S+ P+  P+N    P FP
Sbjct:  726 LQVVSGLSSQLINVKKAAAMDSNSLINETAEIARGIAKVKEVIT---ELKQETGVERFLESMNSFLNKGEKEITELQSHGDNVMKMVKEVTEYFHGNS---ETHPFRIFAVVRDFLTILDQVCKEVGRVNERTVYGSM-PLHSPSNQTATPLFP 872          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH8_ORYSJ (Formin-like protein 8 OS=Oryza sativa subsp. japonica GN=FH8 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.231e-29
Identity = 71/135 (52.59%), Postives = 92/135 (68.15%), Query Frame = -2
Query:  415 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRI-NERTI 816
            L+VVS LS EL NV+KAA MD DVL   V KL  G+ KI  V++L ++       ++F  SM +FLK+A             AL  VK+ITEYFHG++AKEEAHP RIF+VV++FLSTLDQVC+EVGR+  +RT+
Sbjct:  724 LKVVSGLSSELGNVKKAATMDFDVLHGYVNKLETGLEKIKSVLQLEKKCTQ---GQRFFMSMQDFLKEAEREIERVRGEERRALGRVKDITEYFHGDTAKEEAHPLRIFMVVRDFLSTLDQVCREVGRMQQDRTV 855          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH4_ORYSJ (Formin-like protein 4 OS=Oryza sativa subsp. japonica GN=FH4 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.683e-27
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = -2
Query:  400 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVR 816
            L+VVS LS EL NV++AA MD DVL   V+KL AG+ KI  V++L ++ +   +   F  +M EFLK+A             AL  VKEITEYFHGN+ KEEAHP RIF+VV++FLS LD VC+EV +  +RT   S R
Sbjct:  682 LKVVSGLSTELGNVKRAATMDFDVLHGYVSKLEAGLGKIKSVLQLEKQCSQGVN---FFATMREFLKEAEQEIEQVRHDEKAALGRVKEITEYFHGNAVKEEAHPLRIFMVVRDFLSMLDHVCREVSQ-QDRTFVGSAR 816          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH6_ARATH (Formin-like protein 6 OS=Arabidopsis thaliana GN=FH6 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.352e-27
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = -2
Query:  424 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINE 816
            LQVV+ LS +L NV+K+A MD DVLSS V KL  G+ K+   +K       + +  +F  SM  FLK+A             ALSMVKE+TEYFHGN+A+EEAHP RIF+VV++FL  LD VCKEV  + E
Sbjct:  729 LQVVAGLSRDLVNVKKSAGMDFDVLSSYVTKLEMGLDKLRSFLKT------ETTQGRFFDSMKTFLKEAEEEIRKIKGGERKALSMVKEVTEYFHGNAAREEAHPLRIFMVVRDFLGVLDNVCKEVKTMQE 853          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH13_ORYSJ (Formin-like protein 13 OS=Oryza sativa subsp. japonica GN=FH13 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.234e-26
Identity = 62/151 (41.06%), Postives = 94/151 (62.25%), Query Frame = -2
Query:  370 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEVGRINERTIYSSVRP--MPTNPALPP 816
            L++++ LS EL+NV++AA ++ D LS  + +L A + K+  V++L E  + + +S  F  +M  FL++A             AL +VKE TEYFHG++ KEE HP RIF+VV EFL  LD+VC++VGR  ER +  S +   +P   +LPP
Sbjct:  605 LKLLAGLSSELSNVKRAATLEMDTLSGNILRLEADLEKVKLVLQLKETCSDQGASENFFQAMVVFLRRAEAEIKNMKTAEENALRLVKETTEYFHGDATKEEPHPLRIFVVVDEFLLILDRVCRDVGRTPERVMMGSGKSFRVPAGTSLPP 755          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH14_ORYSJ (Formin-like protein 14 OS=Oryza sativa subsp. japonica GN=FH14 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.289e-23
Identity = 56/128 (43.75%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  436 LQVVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGN-SAKEEAHPFRIFLVVKEFLSTLDQVCKEVG 816
            LQVVS L+ EL+N +KA+++D   LS +V++L  G+ KI +V++LN  +   +S+R+F ++M+ FL++A           S+ LS VKE+TEYFHG  S+ +E H  R+F  V+EFL+ LD++CKE G
Sbjct:  678 LQVVSKLAAELSNTKKASSIDMMKLSRDVSELGVGLGKIHDVLRLNSMVTSADSARRFHNTMSMFLRQAEEEILKLQAQESICLSCVKEVTEYFHGELSSGDEGHMARVFGSVREFLAMLDRICKEAG 805          
BLAST of CX046541 vs. ExPASy Swiss-Prot
Match: FH2_ORYSJ (Formin-like protein 2 OS=Oryza sativa subsp. japonica GN=FH2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.154e-18
Identity = 49/124 (39.52%), Postives = 77/124 (62.10%), Query Frame = -2
Query:  439 VVSSLSGELTNVRKAAAMDSDVLSSEVAKLAAGITKIMEVVKLNEEIAMKESSRKFSHSMNEFLKKAXXXXXXXXXXXSVALSMVKEITEYFHGNSAKEEAHPFRIFLVVKEFLSTLDQVCKEV 810
            + + L  ELTNVRK A +D DVL++ V+ L+ G+++I E+V    +++  E ++ F   M  F+  A              L+ V+EITEY+HG+  K+EA P RIF++V++FL  L++VCKEV
Sbjct:  694 IAAGLGAELTNVRKTATVDLDVLTTSVSGLSHGLSRIKELV--GSDLSGDERNQCFVAFMAPFVAHAGEVIRELEDGERRVLAHVREITEYYHGDVGKDEASPLRIFVIVRDFLGMLERVCKEV 815          
The following BLAST results are available for this feature:
BLAST of CX046541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FH1_ORYSJ2.950e-4865.58Formin-like protein 1 OS=Oryza sativa subsp. japon... [more]
FH1_ARATH3.987e-4560.00Formin-like protein 1 OS=Arabidopsis thaliana GN=F... [more]
FH15_ORYSJ1.679e-3551.02Formin-like protein 15 OS=Oryza sativa subsp. japo... [more]
FH2_ARATH2.052e-3351.30Formin-like protein 2 OS=Arabidopsis thaliana GN=F... [more]
FH8_ORYSJ5.231e-2952.59Formin-like protein 8 OS=Oryza sativa subsp. japon... [more]
FH4_ORYSJ1.683e-2750.36Formin-like protein 4 OS=Oryza sativa subsp. japon... [more]
FH6_ARATH8.352e-2750.38Formin-like protein 6 OS=Arabidopsis thaliana GN=F... [more]
FH13_ORYSJ9.234e-2641.06Formin-like protein 13 OS=Oryza sativa subsp. japo... [more]
FH14_ORYSJ4.289e-2343.75Formin-like protein 14 OS=Oryza sativa subsp. japo... [more]
FH2_ORYSJ4.154e-1839.52Formin-like protein 2 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_8F10_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8F10-K20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046541 ID=CX046541; Name=CX046541; organism=Citrus sinensis; type=EST; length=817bp
TAAGTTTCTGACAGATCATTTCGAAAAGGTTTTTAACAGATATACAAAAT
CTACTGTTTCAGCAAATGCTAATTACTTGTTGACACTATTCCCTCCGCTC
CGCCTATGTTACACAAAAGATAAATTAGTTTCTAAAAATCTTTAATGTGA
AGATTATACAGAAAATGCAGCAGCCAAATGAAGATTATGAACTCTACTGC
AAGCTCTATCCAAAATACACTCAGCATCCACCACTTCTGATCTGCGTCCT
TGTGATTTTTAGCAGAGAAATACAGAATCGCCTGAGATGAAAATAAGGCA
TTAAGATTGGGATGAGCTTTCATCATCTGACGAACAATAATGCTGCCGTC
CATTAAAGCCAGGGAAAGCTGGCGGAAGGGCTGGGTTTGTTGGCATTGGA
CGCACTGAACTGTATATAGTTCTCTCATTGATTCTGCCAACTTCCTTGCA
TACCTGATCGAGAGTAGAAAGAAATTCCTTTACCACCAAGAAAATCCGGA
ATGGATGAGCTTCTTCCTTAGCTGAGTTCCCATGGAAGTACTCAGTTATT
TCCTTCACCATAGAAAGAGCAACACTCTCTTGGGATTGGATGCTTATAAT
CTCTTGTTCTGCCTTTTTCAAGAACTCGTTCATTGAATGGGAGAATTTCC
GACTGCTTTCCTTCATTGCAATTTCTTCGTTTAATTTCACTACTTCCATT
ATCTTTGTGATTCCTGCAGCTAATTTTGCAACTTCACTGCTAAGCACATC
TGAATCCATTGCAGCAGCCTTTCTCACATTTGTAAGCTCCCCACTTAGAC
TTGAAACAACTTGTAGG
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