CX046522

Overview
NameCX046522
Unique NameCX046522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046522_ssr802 microsatellite CX046522_ssr802:802..821. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6157 contig Csv1_Contig6157:11..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.981e-90
Identity = 163/193 (84.46%), Postives = 168/193 (87.05%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ                    GIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVD AH AIRNDPRINW+CNPVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WK
Sbjct:    1 MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWK 193
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 8.322e-89
Identity = 157/193 (81.35%), Postives = 166/193 (86.01%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                    GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWK 193
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 8.322e-89
Identity = 157/193 (81.35%), Postives = 166/193 (86.01%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                    GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+ILVDPAHNA+RNDPRINW+CNPVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWK 193
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.469e-85
Identity = 150/193 (77.72%), Postives = 162/193 (83.94%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGAY ++ ELW+KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ                    GIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+EV+LVD AH  IRNDPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWK
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWK 193
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.273e-85
Identity = 150/193 (77.72%), Postives = 164/193 (84.97%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGAY ++ ELW+KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ                    GIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+E+ILVD AH+AIR DPRINW+CN VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWK
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWK 193
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15B_YEAST (60S ribosomal protein L15-B OS=Saccharomyces cerevisiae GN=RPL15B PE=1 SV=2)

HSP 1 Score: 248.825 bits (634), Expect = 2.880e-65
Identity = 123/193 (63.73%), Postives = 137/193 (70.98%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                    G  YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVILVDP H AIR D R NW+CNPVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWK
Sbjct:    1 MGAYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWK 192
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 4.913e-65
Identity = 125/193 (64.77%), Postives = 139/193 (72.02%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGA  ++ EL +KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ                    G  YGKPTNQGV QLK+QRS +S AEER GR+   LRVLNSYWIN+DSTYKYFEVILVDP H AIR DPRINW+ NPVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWK
Sbjct:    1 MGALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWK 192
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15A_YEAST (60S ribosomal protein L15-A OS=Saccharomyces cerevisiae GN=RPL15A PE=1 SV=3)

HSP 1 Score: 247.284 bits (630), Expect = 8.380e-65
Identity = 122/193 (63.21%), Postives = 137/193 (70.98%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 796
            MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                    G  YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWK
Sbjct:    1 MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWK 192
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.867e-64
Identity = 123/194 (63.40%), Postives = 138/194 (71.13%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK 796
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                    G  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWR 193
[Close]
BLAST of CX046522 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 1.867e-64
Identity = 123/194 (63.40%), Postives = 138/194 (71.13%), Query Frame = -2 
Query:  218 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK 796
            MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                    G  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWR 193
The following BLAST results are available for this feature:
BLAST of CX046522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_PETHY1.981e-9084.4660S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL152_ARATH8.322e-8981.3560S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH8.322e-8981.3560S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15B_PICMA1.469e-8577.7260S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA3.273e-8577.7260S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15B_YEAST2.880e-6563.7360S ribosomal protein L15-B OS=Saccharomyces cerev... [more]
RL15_NEUCR4.913e-6564.7760S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15A_YEAST8.380e-6563.2160S ribosomal protein L15-A OS=Saccharomyces cerev... [more]
RL15_RAT1.867e-6463.4060S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB1.867e-6463.4060S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_8E12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8E12-I24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046522 ID=CX046522; Name=CX046522; organism=Citrus sinensis; type=EST; length=863bp
TAAGGCTCTTATAATTCACGGTAGACTCAAGAAACACAAATGTCTTAATT
TAGAATGTAAGGTTTCAAAATAAGATATGTTCCATAGTATTTCAATCTCT
AAAAGACTCAAAATGGCAACTACTATGTCCTCCAGACAAAATCCCTCAAC
TGATGATAAAACATCAAAACCATAACAATGATCAACGGTAGCGACGGAGG
GAAAGAGTATTGTTTCTCTTCCAGGTAGCCCTGCGCGAAGGCCGAGCCTT
GTGGTGCAAGTGTCCTTTTCCACGTAGGCCTCTGTACTTCTTACCTGCAG
AAGTAAGACCACGGAGTTCCCTGTGCTTATGGACAGGATTGCATAACCAA
TTAATTCTTGGGTCATTTCGGATGGCATTATGAGCAGGATCAACCAAGAT
CACCTCAAAGTACTTATAAGTGGAGTCCTCATTGATCCAGTAAGAATTGA
GAACCCTAAGACCTCCCAACTTACGACCGGCACGCTCCTCTGCAACAGAC
CTCTTGCTGCGCTGAAACTTCAGTTGAGTAACACCCTGGTTTGTGGGTTT
ACCATACACAATGCCCTTGGGAACAGGCCTCTTCCGACCACCACGCCTTA
CCCGCACACGATAAACAACATAACCCTGCTTGGCCTTGTAACCCAAGCGT
CGAGCCTTGTCAGGTCGAGTGGGACGGGTGACCCTAACAATAGATGGATG
TTGGCGGTACTCCCAACACCTCACCCTCTGCAAGAACCTCATCACATCTG
ACTGCTTCTTCCTCCATAGCTCCGACACGAACGTGTAAGCCCCCATTGGC
TCTGAGCTGAGCTGAGCTGAGCTGCGCAGTATCCGTGCGACTAGGGTTTT
GGGGGCCCGGTAC
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