CX046518

Overview
NameCX046518
Unique NameCX046518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046518_ssr5 microsatellite CX046518_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR3_ARATH (Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.983e-45
Identity = 86/157 (54.78%), Postives = 117/157 (74.52%), Query Frame = -3
Query:  365 LKEKWGTRLNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENP------LDGASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 817
            LKEK+G  LN   SEKIT V GDI  EDLGL+D +L  E+ +++D +VN AA TKFDERYDVA GINTLGA++++NFAK+C K+K+ VHVSTAYV GE++GLI+E P      L+G +GLD + E K++ +KL++++  GA+ + IT  MK+LG  R
Sbjct:   75 LKEKYGPNLNQLTSEKITIVDGDICLEDLGLQDFDLAHEMIHQVDAIVNLAATTKFDERYDVALGINTLGALNVLNFAKRCAKVKILVHVSTAYVCGEKSGLIMETPYRMGETLNGTTGLDINYEKKLVQEKLDQLRVIGAAPETITETMKDLGLRR 231          

HSP 2 Score: 29.261 bits (64), Expect = 8.983e-45
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = -1
Query:  817 IRAADTESAALRFQNEVLAKDLFNV 891
            +RA+  +SA  RF +E+L KDLF V
Sbjct:   50 LRASKGKSATQRFNDEILKKDLFKV 74          
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR8_ARATH (Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.166e-38
Identity = 73/151 (48.34%), Postives = 105/151 (69.54%), Query Frame = -3
Query:  365 RLNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENPL-------DGASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 796
            +LN+ +SEK+  VAGDI+ + LG+KDSNL+E +  E+D++VN AA T FDERYD+  GINT GA++++NFAKKCVK ++ +HVSTAYV GE+ GL+ E P        +    LD + E +++ Q+L E+  +G S++  T  MK LG ER
Sbjct:   78 KLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAATTNFDERYDIGLGINTFGALNVLNFAKKCVKAQLLLHVSTAYVCGEKPGLLPEKPFVMEEICNENGLQLDINLERELMKQRLKELNEQGCSEEGTTFYMKELGMER 228          

HSP 2 Score: 28.8758 bits (63), Expect = 4.166e-38
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = -1
Query:  811 IRAADTESAALRFQNEVLAKDLFNV*R 891
            +RA+D E+A  R + E   KDLF V R
Sbjct:   45 VRASDNEAATKRLRTEAFEKDLFKVLR 71          
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR4_ARATH (Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.213e-38
Identity = 70/149 (46.98%), Postives = 106/149 (71.14%), Query Frame = -3
Query:  365 LNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILE------NPLDGASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 793
            L +FI+EK+  + GDIS ++LG+K S+L + +WNE+D++VN AA T FDERYDV   +NT G ++++NFAKKCVK ++ +HVSTAYV GE++GL+ E        L+G   L  + EM+++ QKL E++ +  S++EI+  MK+LG  R
Sbjct:   79 LKAFITEKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNVAATTNFDERYDVGLSVNTFGPLNVLNFAKKCVKGQLLLHVSTAYVRGEKSGLLHEKTFHMGETLNGHRKLVIETEMELMKQKLKELQKQNCSEEEISQSMKDLGMSR 227          

HSP 2 Score: 35.4242 bits (80), Expect = 9.213e-38
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = -1
Query:  817 IRAADTESAALRFQNEVLAKDLFNV 891
            +RAAD ESA  RF +EVL KDLF V
Sbjct:   45 LRAADNESAMQRFHSEVLEKDLFRV 69          
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR5_ARATH (Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.200e-37
Identity = 72/151 (47.68%), Postives = 106/151 (70.20%), Query Frame = -3
Query:  365 RLNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENPL-------DGASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 796
            +LN+ + EK+  V GDI+++ LG+ DS+L+E +  E+D++VN AA T FDERYDV  GINT GA++++NFAKKCVK+++ +HVSTAYV GE+ GLI E P        +    LD + E +++ Q+L E+  +  S+++ITL MK LG ER
Sbjct:   78 KLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNVAATTNFDERYDVGLGINTFGALNVLNFAKKCVKVQLLLHVSTAYVCGEKPGLIPEKPFIMEEIRNENGLQLDINLERELMKQRLKELNEQDCSEEDITLSMKELGMER 228          

HSP 2 Score: 29.6462 bits (65), Expect = 1.200e-37
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = -1
Query:  805 IRAADTESAALRFQNEVLAKDLFNV*RKS 891
            +RA+D E+A  R + EV  K+LF V R++
Sbjct:   45 VRASDNEAATKRLRTEVFEKELFKVLRQN 73          
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR1_ARATH (Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.343e-33
Identity = 72/149 (48.32%), Postives = 105/149 (70.47%), Query Frame = -3
Query:  365 LNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENP------LDGASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 793
            LN+ + EKI  V GDIS ++LGLKD++L + +W+E+D+++N AA T FDERYD+  GINT GA++++NFAKKCVK ++ +HVSTAY++GE+ GL+LE P      L G   LD + E  ++ QKL E+  +  S +EI+  MK+ G  R
Sbjct:   79 LNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINIAATTNFDERYDIGLGINTFGALNVLNFAKKCVKGQLLLHVSTAYISGEQPGLLLEKPFKMGETLSGDRELDINIEHDLMKQKLKEL--QDCSDEEISQTMKDFGMAR 225          
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR2_ARATH (Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.225e-25
Identity = 72/164 (43.90%), Postives = 96/164 (58.54%), Query Frame = -3
Query:  365 LKEKWGTRLNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENP------------LDG-ASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 817
            LKE  G    SF+  K+  V G+I   ++GL+ ++  EE+  E+DV++NSAA T F+ERYDVA  INT G  +L+ FAKKC KLK+F+ VSTAYV G+R G I+E P            L+G    LD D EMK+      E   KG   ++    MK+LG ER
Sbjct:  189 LKETHGASYMSFMLTKLIPVTGNICDSNIGLQ-ADSAEEIAKEVDVIINSAANTTFNERYDVALDINTRGPGNLMGFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFSMGDCIATENFLEGNRKALDVDREMKL----ALEAARKGTQNQDEAQKMKDLGLER 347          

HSP 2 Score: 25.409 bits (54), Expect = 2.225e-25
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = -1
Query:  820 IRAADTESAALRFQNEVLAKDLFN 891
            I+A   E+A  R +NEVL  +LFN
Sbjct:  164 IKAKSKEAAIERLKNEVLDAELFN 187          
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR6_ARATH (Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana GN=FAR6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.729e-22
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = -3
Query:  365 LKEKWGTRLNSFISEKITFVAGDISSEDLGLKDSNLKEELWNELDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILENPL----DGASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 817
            LK+  G+   +F+  K+  V GDI  ++LG+K S +   +  E+DV+++    T FD+RYD A  +N LG   L++F K C KLK+F+H STAYV G+R G +LE PL    +  S L+  +E+K+  + + + + +   +K     +K LG ER
Sbjct:  142 LKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIK-SEIANMISEEIDVIISCGGRTTFDDRYDSALSVNALGPGRLLSFGKGCRKLKLFLHFSTAYVTGKREGTVLETPLCIGENITSDLNIKSELKLASEAVRKFRGREEIKK-----LKELGFER 290          

HSP 2 Score: 25.0238 bits (53), Expect = 2.729e-22
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = -1
Query:  817 IRAADTESAALRFQNEVLAKDLFNV 891
            +R+ D ESA  R  +E+++ DLF +
Sbjct:  117 MRSKDQESANKRLYDEIISSDLFKL 141          
BLAST of CX046518 vs. ExPASy Swiss-Prot
Match: FACR7_ARATH (Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana GN=FAR7 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.474e-19
Identity = 50/114 (43.86%), Postives = 74/114 (64.91%), Query Frame = -3
Query:  365 LDVMVNSAAITKFDERYDVAFGINTLGAIHLVNFAKKCVKLKVFVHVSTAYVAGERTGLILE------NPLDGASGLDFDAEMKVIDQKLNEIKTKGASQKEITLVMKNLGTER 688
            L ++V ++     ++RYDVA GINT GAI+++NFAKKCVK K+ +HVST YV GER G I+E        L+G + +D + E ++ DQK  + K +G S++E    MK+ G +R
Sbjct:   41 LYLLVRASDKKSAEQRYDVALGINTFGAINVLNFAKKCVKPKLLLHVSTVYVCGERPGHIVEKHFAMGESLNGKNKVDINTERRLADQKSKQFKEQGCSEEETEQAMKDFGLKR 154          
The following BLAST results are available for this feature:
BLAST of CX046518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
FACR3_ARATH8.983e-4554.78Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana... [more]
FACR8_ARATH4.166e-3848.34Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana... [more]
FACR4_ARATH9.213e-3846.98Probable fatty acyl-CoA reductase 4 OS=Arabidopsis... [more]
FACR5_ARATH1.200e-3747.68Probable fatty acyl-CoA reductase 5 OS=Arabidopsis... [more]
FACR1_ARATH2.343e-3348.32Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana... [more]
FACR2_ARATH2.225e-2543.90Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana... [more]
FACR6_ARATH2.729e-2236.77Fatty acyl-CoA reductase 6, chloroplastic OS=Arabi... [more]
FACR7_ARATH1.474e-1943.86Putative fatty acyl-CoA reductase 7 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_8E09_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8E09-I18-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046518 ID=CX046518; Name=CX046518; organism=Citrus sinensis; type=EST; length=891bp
CTTTTTCATTCATTCATTTTTTTTTTCGGAATTTGTTATTACAATCTATA
GGTATATTATAATCTGAAGTTTATTGGAAATTACTCACACATAGTATAAT
CTAGAGGTCAATAGAAAATAACCCAGAAATCTACTCCTACTAAAAGACAA
GACCTTTATCCACTCATATAAAAAATATATTTACTCTCACTAATATATAT
AAAAAAAAATGCATCTATCTCTATCCATAATTATAAAAGGGAATTTTATA
ATCAGGGTTCATTTATTTGAATTTAGTGTTGACCATCGAAATCTATCTTC
GGTCATTATTGTGTAACACTTGAAAGTACTATGATCACTCGCAACGTTCA
ATCATCTTTAACTATCTTTCGGTGCCCAAATTTTTCATGACAAGTGTAAT
TTCCTTCTGCGAAGCTCCCTTCGTTTTGATTTCATTCAGTTTCTGATCTA
TCACCTTCATCTCCGCATCAAAGTCTAATCCAGATGCGCCATCAAGAGGA
TTCTCCAATATAAGCCCTGTCCTTTCCCCGGCTACATAAGCAGTGGATAC
ATGAACAAAGACCTTTAACTTGACACATTTCTTCGCGAAGTTTACAAGAT
GTATAGCTCCCAAGGTGTTGATGCCAAACGCAACATCATATCTTTCGTCA
AATTTGGTTATGGCTGCTGAATTGACCATGACGTCTAATTCATTCCATAA
CTCTTCTTTTAAATTAGAGTCTTTCAATCCCAAATCTTCACTAGAGATAT
CACCAGCGACAAAAGTAATCTTTTCTGAGATAAATGAATTTAGACGTGTA
CCCCACTTTTCCTTTAAACATTAAACAGATCTTTTGCCAACACCTCATTC
TGGAAACGTAGTGCGGCTGACTCAGTATCGGCAGCTCTTAT
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