CX046511

Overview
NameCX046511
Unique NameCX046511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX046511 vs. ExPASy Swiss-Prot
Match: Y3136_ARATH (Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1)

HSP 1 Score: 402.134 bits (1032), Expect = 1.964e-111
Identity = 186/267 (69.66%), Postives = 224/267 (83.90%), Query Frame = 3 
Query:    3 VLLRGFDVKTANDFNDVVEAFGYEELPYVGGAAPRSHVVGRVFTANESSLDRNIPFHQEMALLPQFPSKLFFFCEVEPVSGGDTPLVLSHIVYERMKESYPEFVQQLEQDGLIYTRIYQEKDDLSSPTGRGWKSIFLTEDKSLAEERAANLGLKLEWMEDGGVKTVLGPIPAVTYDKIRQRKIWFNSIVMAYTCWKDTQNDPVKAVTFGNGSPYPEDIVYNLMKILEEECVAIPWQNGDVLLIDNLAVLHARRSSSRPRHILASLCK 803
            VL RGF V +A+DFNDVVEAFG++ELPYVGGAAPR+ VVGRVFTANES  D+ IPFH EMA + +FPSKLFF+CE+EP  GG+TP+VLSH+VYERMK+ +PEFVQ+LE+ GL+Y R+  E DD SSP GRGWKS FLT DK+LAE+RA +LG+KLEW EDGG KTV+GPIPA+ YD+ R RK+WFNS+V AYT W+D +NDP KAVTFG+G P P DIV++ ++ILEEECVA+PWQ GDVLLIDN AVLH+RR    PR +LASLCK
Sbjct:   64 VLFRGFPVNSADDFNDVVEAFGFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCGGETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDKNLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVWFNSMVAAYTGWEDKRNDPRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLHSRRPFDPPRRVLASLCK 330
The following BLAST results are available for this feature:
BLAST of CX046511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3136_ARATH1.964e-11169.66Clavaminate synthase-like protein At3g21360 OS=Ara... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_8E05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-8E05-I10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046511 ID=CX046511; Name=CX046511; organism=Citrus sinensis; type=EST; length=846bp
CCGTGCTTCTCAGAGGGTTCGATGTCAAGACAGCCAATGACTTCAACGAC
GTCGTTGAGGCTTTTGGCTACGAGGAGTTGCCCTACGTCGGCGGTGCTGC
TCCCAGAAGCCACGTTGTTGGTCGAGTTTTTACTGCCAATGAATCTTCAC
TTGATCGTAACATTCCTTTTCACCAGGAAATGGCTTTGCTTCCTCAGTTC
CCGTCAAAGTTGTTCTTCTTCTGTGAAGTAGAGCCAGTAAGTGGAGGAGA
CACTCCTCTAGTCCTTAGCCACATTGTCTACGAGAGGATGAAAGAGAGTT
ACCCTGAATTTGTTCAACAACTAGAGCAGGATGGATTGATTTATACCAGA
ATATATCAAGAAAAGGATGATCTTTCATCTCCGACCGGCCGCGGCTGGAA
ATCCATTTTCTTGACTGAAGACAAGAGCCTCGCCGAGGAAAGGGCTGCTA
ATTTGGGCTTGAAATTGGAGTGGATGGAAGACGGTGGAGTGAAGACAGTG
TTGGGTCCAATCCCAGCTGTTACGTATGATAAAATCAGGCAACGGAAGAT
TTGGTTCAATAGCATAGTAATGGCTTATACATGCTGGAAAGACACACAAA
ATGATCCTGTTAAGGCAGTCACTTTTGGGAATGGTAGTCCATATCCAGAG
GATATCGTCTACAACTTAATGAAAATCCTTGAAGAGGAATGTGTTGCCAT
CCCTTGGCAGAATGGCGACGTTCTGCTGATAGATAACTTGGCTGTGCTTC
ATGCCCGTAGATCATCCAGTCGTCCTCGCCATATATTGGCTTCTCTTTGC
AAGTAGAAAATAAACTCTATTCTTGTGATTTTTATTTTTTTTTTTT
back to top