FC921943

Overview
NameFC921943
Unique NameFC921943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length222
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1574 contig Csv1_Contig1574:1482..1703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROF_TOBAC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Nicotiana tabacum GN=DHAPS-1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.633e-26
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  478 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 534          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROG_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.639e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  477 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROF_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum tuberosum GN=SHKA PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.639e-26
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLEL+FIIAERLRKRR+
Sbjct:  477 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELSFIIAERLRKRRL 533          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROF_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Arabidopsis thaliana GN=DHS1 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.107e-26
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR 169
            HLEMTGQNVTECIGGSRTVT+DDLSSRYHTHCDPRLNASQSLELAFI+AERLRKRR
Sbjct:  463 HLEMTGQNVTECIGGSRTVTYDDLSSRYHTHCDPRLNASQSLELAFIVAERLRKRR 518          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROG_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.383e-25
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTECIGGSRTVTFDDLS RYHTHCDPRLNASQSLELAFIIAERLR+RR+
Sbjct:  468 HLEMTGQNVTECIGGSRTVTFDDLSDRYHTHCDPRLNASQSLELAFIIAERLRRRRM 524          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROG_ARATH (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Arabidopsis thaliana GN=DHS2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.359e-25
Identity = 52/57 (91.23%), Postives = 57/57 (100.00%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTEC+GGSRT+T++DLSSRYHTHCDPRLNASQSLELAFIIAERLRKRR+
Sbjct:  440 HLEMTGQNVTECVGGSRTITYNDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRL 496          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROG_SOLTU (Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic OS=Solanum tuberosum GN=SHKB PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.963e-25
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  450 HLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROF_SOLLC (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.963e-25
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTECIGGSRTVT+DDL SRYHTHCDPRLNASQSLEL+FI+AERLR+RR+
Sbjct:  450 HLEMTGQNVTECIGGSRTVTYDDLGSRYHTHCDPRLNASQSLELSFIVAERLRRRRM 506          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROF_ORYSJ (Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=DAHPS1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 8.963e-25
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 2
Query:    2 HLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKRRI 172
            HLEMTGQNVTECIGGSRTVTFDDL  RYHTHCDPRLNASQSLEL+FIIAERLR++RI
Sbjct:  482 HLEMTGQNVTECIGGSRTVTFDDLGDRYHTHCDPRLNASQSLELSFIIAERLRRKRI 538          
BLAST of FC921943 vs. ExPASy Swiss-Prot
Match: AROF_CATRO (Probable phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplastic OS=Catharanthus roseus GN=DHS1 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.810e-17
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 2
Query:   29 TECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRK 163
            TEC+GGSRT+T+DD  +RYHTHCDPRLNASQSLELAFIIAERLRK
Sbjct:  439 TECVGGSRTITYDDRQTRYHTHCDPRLNASQSLELAFIIAERLRK 483          
The following BLAST results are available for this feature:
BLAST of FC921943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AROF_TOBAC1.633e-2698.25Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_SOLLC3.639e-2696.49Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLTU3.639e-2696.49Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ARATH8.107e-2696.43Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROG_ORYSJ1.383e-2594.74Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_ARATH2.359e-2591.23Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROG_SOLTU8.963e-2589.47Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chl... [more]
AROF_SOLLC8.963e-2589.47Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_ORYSJ8.963e-2591.23Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chl... [more]
AROF_CATRO1.810e-1786.67Probable phospho-2-dehydro-3-deoxyheptonate aldola... [more]

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Properties
Property NameValue
Genbank descriptionC06054C03T7 RindPdigS Citrus sinensis cDNA clone C06054C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921943 ID=FC921943; Name=FC921943; organism=Citrus sinensis; type=EST; length=222bp
ACATTTGGAGATGACAGGCCAGAATGTGACAGAGTGCATCGGTGGGTCAA
GAACAGTGACATTCGACGACTTGAGTTCACGCTACCACACCCACTGTGAC
CCTAGGCTTAATGCTTCACAGTCACTTGAGCTTGCCTTCATCATTGCCGA
GCGCCTCAGAAAGAGGAGGATTAGCTCACAGCAACCTCTTGCCTCTTCGT
CTCTCCTGTAGAATGGCCTGAG
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